PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012569925.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

YABBY

Protein Properties

Length: 297aa MW: 34054.9 Da PI: 9.3536

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012569925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	21.3	7.9e-07	117	208	73	166
YABBY 73 eelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 +kv++++ + ++++ s+ s +++ +s++e + + + p ++ e ++r s y f+k+e r+ka +i + +a W + +i XP_012569925.1 117 SSTKVKRKHEDDLMVEKMSNDYSSQMTGVSSQEPQVLLQSPSNNK--EMKKRGQSGYQIFLKQECARLKAYSQEIDGTKILRMAVDAWKKLSDI 208 455666666666677776666677777778899999998887666..6677889**********************999999999999888766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46774	3.79E-17	5	111	IPR001606	ARID DNA-binding domain
Gene3D	G3DSA:1.10.150.60	2.1E-16	7	109	IPR001606	ARID DNA-binding domain
SMART	SM01014	5.7E-11	17	106	No hit	No description
PROSITE profile	PS51011	15.859	20	110	IPR001606	ARID DNA-binding domain
SMART	SM00501	3.1E-8	21	111	IPR001606	ARID DNA-binding domain
Pfam	PF01388	1.4E-12	23	106	IPR001606	ARID DNA-binding domain
SuperFamily	SSF47095	3.4E-10	160	225	IPR009071	High mobility group box domain
SMART	SM00398	0.0029	163	233	IPR009071	High mobility group box domain
PROSITE profile	PS50118	9.786	164	232	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.4E-7	165	225	IPR009071	High mobility group box domain
Pfam	PF00505	2.0E-7	165	228	IPR009071	High mobility group box domain
CDD	cd01390	8.75E-7	165	219	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MIPSQSNTQL MNVVVKQSFP DDSESFYAKL TDLLDSSGLT LIFNVRETSL DLYLFYLEVT 60 RRGGFHQVGQ QKKWGEVVCA LKLEGSNTKL CAQVEKLYAH LLYKFEKLYF YRCPATSSTK 120 VKRKHEDDLM VEKMSNDYSS QMTGVSSQEP QVLLQSPSNN KEMKKRGQSG YQIFLKQECA 180 RLKAYSQEID GTKILRMAVD AWKKLSDIEK QPYLEESKKI RGKNKAAMII ENKQKSTHED 240 LKKDEKWPSM YSGDYYVSSQ PLANYSFVNN AAGLKMTEKP SKDPLFLVGF DAYHSSK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012569925.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012569925.1	0.0	putative high mobility group B protein 11 isoform X2
TrEMBL	A0A1S3E2F0	0.0	A0A1S3E2F0_CICAR; putative high mobility group B protein 11 isoform X2
STRING	XP_004496029.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12432	2	2