PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569903.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 358aa    MW: 39824.2 Da    PI: 10.0855
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569903.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.21.9e-29155213159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYG+K +kgs++pr+Y+rC+++gC+v+k+ver+ ++p++v+ tYeg+H+h+
  XP_012569903.1 155 VEDGYRWRKYGKKAIKGSPNPRGYFRCATQGCNVRKQVERDIRNPRFVISTYEGKHKHP 213
                     58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-29142215IPR003657WRKY domain
SuperFamilySSF1182901.57E-25149215IPR003657WRKY domain
PROSITE profilePS5081132.397150215IPR003657WRKY domain
SMARTSM007742.0E-33155214IPR003657WRKY domain
PfamPF031061.4E-23156213IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MMKNKNNKNE IKILNFDAGS SAKVNTKKKW YPIDLNVEAP PSPDYSQDCG DGGDVAMGGV  60
GDVEVEEGVN VVNSEILKAK KGKMPMICSE VGDAAVVVEG VNDEMMLRRQ DDVANGSRLQ  120
RKRKRDFSEY YIPPGSRLCR GPKAVIRVES SYDYVEDGYR WRKYGKKAIK GSPNPRGYFR  180
CATQGCNVRK QVERDIRNPR FVISTYEGKH KHPVPTSKFK FTNSTIAALS IPIKTTSTAT  240
NNIPIFPPQQ PSPMPFSLHH RYSNSHATPI TNNYLWRPNY YNFFNHANNT TRPHTSGLNF  300
HHPYALAAPA APTAPTHHRP IIGGSVNRGF PPLDRAPDFL QLGGYGVKAA PAAQLPLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-23146215877Probable WRKY transcription factor 4
2ayd_A5e-23143215274WRKY transcription factor 1
2lex_A4e-23146215877Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569903.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012569903.10.0probable WRKY transcription factor 72
TrEMBLA0A1S3E3830.0A0A1S3E383_CICAR; probable WRKY transcription factor 72
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2121434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-28WRKY DNA-binding protein 28