PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012569543.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 254aa    MW: 29004.2 Da    PI: 8.6643
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012569543.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1092.2e-34111168259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp++v +tYeg+H+h+
  XP_012569543.1 111 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKHVERSLSDPSIVMTTYEGKHTHP 168
                     8********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381305.3E-976254IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.803.3E-3595170IPR003657WRKY domain
SuperFamilySSF1182901.7E-29102170IPR003657WRKY domain
PROSITE profilePS5081132.294105170IPR003657WRKY domain
SMARTSM007741.6E-40110169IPR003657WRKY domain
PfamPF031061.5E-26111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEKGRANMND YAIGSSYDEY SFPSVFDLSE EKSSCSDQVF NNHQQPATPN SSSISSTSSE  60
AINDENTKTL HDQPHNIHKP LKQLKVKKTN EKRQREARIA FMTKSEVDHL EDGYRWRKYG  120
QKAVKNSPFP RSYYRCTSVS CNVKKHVERS LSDPSIVMTT YEGKHTHPNP IMSRSSAGII  180
SSSECTTNYV SQYYNQHRQQ LIFNTLSSLG FPSKNTNNIA ATFPQEKPLC NNNSRVRDYG  240
LLEDVVPSHM FKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-271031701077Probable WRKY transcription factor 4
2lex_A2e-271031701077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012569543.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1463341e-131BT146334.1 Medicago truncatula clone JCVI-FLMt-7D17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027188124.11e-180WRKY transcription factor 23
SwissprotO229005e-63WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A3Q7X3171e-179A0A3Q7X317_CICAR; WRKY transcription factor
STRINGXP_004494936.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.14e-59WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. PrĂ¡t T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]