PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012569543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 254aa MW: 29004.2 Da PI: 8.6643 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 109 | 2.2e-34 | 111 | 168 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp++v +tYeg+H+h+ XP_012569543.1 111 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKHVERSLSDPSIVMTTYEGKHTHP 168 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038130 | 5.3E-97 | 6 | 254 | IPR017396 | PWRKY transcription factor, group IIc |
Gene3D | G3DSA:2.20.25.80 | 3.3E-35 | 95 | 170 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-29 | 102 | 170 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.294 | 105 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-40 | 110 | 169 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-26 | 111 | 168 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEKGRANMND YAIGSSYDEY SFPSVFDLSE EKSSCSDQVF NNHQQPATPN SSSISSTSSE 60 AINDENTKTL HDQPHNIHKP LKQLKVKKTN EKRQREARIA FMTKSEVDHL EDGYRWRKYG 120 QKAVKNSPFP RSYYRCTSVS CNVKKHVERS LSDPSIVMTT YEGKHTHPNP IMSRSSAGII 180 SSSECTTNYV SQYYNQHRQQ LIFNTLSSLG FPSKNTNNIA ATFPQEKPLC NNNSRVRDYG 240 LLEDVVPSHM FKEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-27 | 103 | 170 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-27 | 103 | 170 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012569543.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146334 | 1e-131 | BT146334.1 Medicago truncatula clone JCVI-FLMt-7D17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027188124.1 | 1e-180 | WRKY transcription factor 23 | ||||
Swissprot | O22900 | 5e-63 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A3Q7X317 | 1e-179 | A0A3Q7X317_CICAR; WRKY transcription factor | ||||
STRING | XP_004494936.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1002 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 4e-59 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
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