PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012568958.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | FAR1 | ||||||||
Protein Properties | Length: 212aa MW: 24279.6 Da PI: 8.5816 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.7 | 2.5e-25 | 41 | 130 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY eYA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k + e++ r + r gCka++ k+ek+gkw+v++++++HnH+l XP_012568958.1 41 KFYFEYARRVGFAVRVMQRRRSGIDGRTLARRLGCNKQGFSPNNKGTLGLEKKLRHSAREGCKATILFKLEKSGKWVVSRFVKDHNHPLI 130 6**********************************************9****************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-23 | 41 | 130 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MDKGNEADHT CLEKSTSIFD GVEVQEPYVG MEFDSEEAAK KFYFEYARRV GFAVRVMQRR 60 RSGIDGRTLA RRLGCNKQGF SPNNKGTLGL EKKLRHSARE GCKATILFKL EKSGKWVVSR 120 FVKDHNHPLI ATANGFNSAD DKDKKIAELT IELERQDELC AAYREKLMSF INNVEEETVE 180 MSTRIQLIIE NVRRAESELQ KCSQNSKPRY CT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012568958.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC157777 | 1e-134 | AC157777.2 Medicago truncatula chromosome 7 clone mth2-25c14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012568958.1 | 1e-158 | protein FAR1-RELATED SEQUENCE 12 | ||||
Swissprot | Q9SZL8 | 4e-23 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1S3E0I2 | 1e-157 | A0A1S3E0I2_CICAR; protein FAR1-RELATED SEQUENCE 12 | ||||
STRING | XP_007140743.1 | 1e-127 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 2e-73 | FAR1 family protein |
Publications ? help Back to Top | |||
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