PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568692.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 458aa    MW: 50651.8 Da    PI: 7.276
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568692.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.4e-31116173260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ +++++ei+Y+g+H+h+k
  XP_012568692.1 116 NDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSD-EGQITEIIYKGTHDHPK 173
                     8***************************************9.***************85 PP
2WRKY106.71.2e-33278336159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_012568692.1 278 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 336
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-26108174IPR003657WRKY domain
PROSITE profilePS5081122.596110174IPR003657WRKY domain
SuperFamilySSF1182901.09E-24113174IPR003657WRKY domain
SMARTSM007742.2E-33115173IPR003657WRKY domain
PfamPF031061.8E-24116172IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-38263338IPR003657WRKY domain
SuperFamilySSF1182901.83E-29270338IPR003657WRKY domain
PROSITE profilePS5081138.825273338IPR003657WRKY domain
SMARTSM007743.1E-39278337IPR003657WRKY domain
PfamPF031062.5E-26279336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MPSATFPLTT TCFNTGTVND RKSSFFEFKP HERNMVPADF TNHVSEQSTQ VESQGKGQSF  60
GSSPLIENEI ADQSNELSLS SPVQMVSSGA SAHVDVNLDE LNHKGNTTNA PEKVSNDGYN  120
WRKYGQKHVK GSEFPRSYYK CTHPNCEVKK LFERSDEGQI TEIIYKGTHD HPKPQPSNRY  180
SAGSIMSMQG ERSDRASSLA GRDVEPNRTP EQSTVATNDH SLEGARFAST RINDEVDDDD  240
IFSKRRKMEL GNADIIPIVK PIREPRVVVQ TTSEVDILDD GYRWRKYGQK VVRGNPNPRS  300
YYKCTNAGCP VRKHVERASH DPKAVITTYE GKHNHDVPAA KNSSHDMAGH AASGGQTRIK  360
FEECDTISLD LGMGISSPAE NRSNGQGKML FSELANSQTP TSNSNFKFVH TTSAPSYYGV  420
LNNSSNLFGS RENRNDGSSL NHSSYPCSQS MGRILMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-39105339778Probable WRKY transcription factor 4
2lex_A6e-39105339778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568692.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491474.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-150WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1S2XM720.0A0A1S2XM72_CICAR; probable WRKY transcription factor 20 isoform X1
STRINGXP_004491474.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-153WRKY family protein