PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012568375.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ZF-HD
Protein Properties Length: 258aa    MW: 28180 Da    PI: 6.5569
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012568375.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer95.44.7e-3056113260
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     ++v+Y+eC+kNhA+s GghavDGC+Ef+++ geegt +a+ CaAC+CHRnFHR+e + e
  XP_012568375.1  56 STVKYRECQKNHAVSFGGHAVDGCCEFIAA-GEEGTLEAVICAACNCHRNFHRKEIDGE 113
                     579**************************9.999********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.5E-2858110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.3E-2659110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1959120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.96160109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.97E-20184256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-29187257IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-23198255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEFDEQEEQE EEMEIPEAST PVPASYDSLG NSASRSKFAV GADGRKISGG GGGFASTVKY  60
RECQKNHAVS FGGHAVDGCC EFIAAGEEGT LEAVICAACN CHRNFHRKEI DGETVSSCQR  120
SQPPPPPPQY HHYNQFSPYY HRTSPSTAGY LHHHLATPPI SHHRPLALPA AASGGGFSGE  180
EDDMSNPSSS GGGGGGSKKR FRTKFTQEQK EKMLAFAEQH GWRIQKHDEA DVEQFCAENC  240
VKRNVLKVWM HNNKNTLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-271972561675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012568375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012568375.10.0zinc-finger homeodomain protein 2-like
SwissprotQ6YXH57e-67ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A1S3DY420.0A0A1S3DY42_CICAR; zinc-finger homeodomain protein 2-like
STRINGXP_004490406.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-59homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]