PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_012568038.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 145aa MW: 16343.6 Da PI: 7.0143 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.7 | 1.2e-44 | 23 | 121 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasnv+k+l+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+ql +l++el+ XP_012568038.1 23 PCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKIFGASNVSKILNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQLIRLQKELD 117 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_012568038.1 118 ATNA 121 9876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.796 | 22 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-44 | 23 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 145 aa Download sequence Send to blast |
MEVAHSLLVS HDKIEIMMAS NSPCAACKFL RRKCNQDCIF APYFPPEEPH KFANVHKIFG 60 ASNVSKILNE VLPHQREDAV NSLAYEAEAR IKDPVYGCVG AISVLQRQLI RLQKELDATN 120 ADLIRFSTNQ GSSFFNYPSN WNNDS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-62 | 19 | 130 | 7 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-62 | 19 | 130 | 7 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_012568038.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC174342 | 1e-114 | AC174342.16 Medicago truncatula chromosome 6 clone mth2-166e17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012568038.1 | 1e-106 | LOB domain-containing protein 25 isoform X1 | ||||
Swissprot | Q8L8Q3 | 3e-67 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A1S3DXW6 | 1e-104 | A0A1S3DXW6_CICAR; LOB domain-containing protein 25 isoform X1 | ||||
STRING | XP_004489212.1 | 5e-93 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1091 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-69 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
---|---|---|---|
|