PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_012568037.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 129aa MW: 14540.5 Da PI: 7.8643

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012568037.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.2	7.9e-45	7	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dC++apyfp e+p+kfanvhk+FGasnv+k+l+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+ql +l++el+ XP_012568037.1 7 PCAACKFLRRKCNQDCIFAPYFPPEEPHKFANVHKIFGASNVSKILNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQLIRLQKELD 101 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_012568037.1 102 ATNA 105 9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.796	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-44	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MMASNSPCAA CKFLRRKCNQ DCIFAPYFPP EEPHKFANVH KIFGASNVSK ILNEVLPHQR 60 EDAVNSLAYE AEARIKDPVY GCVGAISVLQ RQLIRLQKEL DATNADLIRF STNQGSSFFN 120 YPSNWNNDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-62	3	114	7	118	LOB family transfactor Ramosa2.1
5ly0_B	2e-62	3	114	7	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012568037.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC174342	1e-114	AC174342.16 Medicago truncatula chromosome 6 clone mth2-166e17, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012568038.1	1e-93	LOB domain-containing protein 25 isoform X1
Swissprot	Q8L8Q3	3e-67	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A1S3DXW6	3e-92	A0A1S3DXW6_CICAR; LOB domain-containing protein 25 isoform X1
STRING	XP_004489212.1	9e-93	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-69	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]