PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

C2H2

Protein Properties

Length: 235aa MW: 26754.4 Da PI: 9.3639

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012567653.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.9	2e-06	90	109	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r nL+ H+ XP_012567653.1 90 FSCPVCLKTFNRYNNLQMHM 109 89*****************9 PP
2	zf-C2H2	12.1	0.00059	174	196	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cgk+ k + ++H +++ XP_012567653.1 174 FTCRKCGKPLAVKGDWRTHEKNC 196 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.35E-6	77	112	No hit	No description
PROSITE profile	PS50157	10.18	90	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.18	90	112	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.9E-6	90	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	137	169	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	5.79E-5	159	194	No hit	No description
SMART	SM00355	160	174	194	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MNSSTNDLQP LPLLSSFLGS TSQEPLHQNE NHKSCYNNQA EDVTVALHIG LPDNSIESPI 60 DNGFVNVPTQ VPNNYWIPTH EQILIGFSHF SCPVCLKTFN RYNNLQMHMW GHGSQYRRGP 120 DSLKRTHPRP LLDIPCYCCS KGCKNNIEHP RAKPLKDFRT LQTHYKRKHG SKPFTCRKCG 180 KPLAVKGDWR THEKNCGKRW LCICGSDFKH KRSLKDHIKA FGFGHSPFSS SSDGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	125	DSLKRT

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012567653.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP700160	1e-133	FP700160.1 Medicago truncatula chromosome 5 clone mtf83-100f22, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012567653.1	1e-177	protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	5e-96	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A1S3DWQ9	1e-175	A0A1S3DWQ9_CICAR; protein TRANSPARENT TESTA 1
STRING	XP_004516564.1	1e-177	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	9e-94	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]