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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012567364.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HB-other | ||||||||
Protein Properties | Length: 178aa MW: 19887.2 Da PI: 8.2577 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.5 | 8.2e-07 | 2 | 23 | 33 | 54 |
HHHHCTS-HHHHHHHHHHHHHH CS Homeobox 33 LAkklgLterqVkvWFqNrRak 54 LAk++gL+ +qV++WF N R + XP_012567364.1 2 LAKQTGLSRNQVSNWFINARVR 23 9*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.139 | 1 | 27 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-13 | 1 | 31 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.9E-9 | 1 | 23 | IPR008422 | Homeobox KN domain |
SuperFamily | SSF46689 | 5.13E-9 | 1 | 34 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.71E-7 | 2 | 28 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MLAKQTGLSR NQVSNWFINA RVRLWKPMVE EIHMLESQQT QKEPQRDENP STSTDKFQLR 60 SNNNIAENPC NSTDKFHNVA YKRTRNELSN MSVLNQQVGS NGVSMGSNVA TSNNGVSLTL 120 GLHQNHGIGL SEPFNMSVAQ CFGLALQPDS YVMSTFQSQN RQFGRDLIGG QILHDFVG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012567364.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004515686.1 | 1e-131 | BEL1-like homeodomain protein 9 isoform X1 | ||||
Refseq | XP_012567363.1 | 1e-131 | BEL1-like homeodomain protein 9 isoform X1 | ||||
Refseq | XP_012567364.1 | 1e-131 | BEL1-like homeodomain protein 9 isoform X2 | ||||
Refseq | XP_027186728.1 | 1e-131 | BEL1-like homeodomain protein 9 isoform X1 | ||||
Refseq | XP_027186729.1 | 1e-131 | BEL1-like homeodomain protein 9 isoform X1 | ||||
Swissprot | Q9LZM8 | 4e-33 | BLH9_ARATH; BEL1-like homeodomain protein 9 | ||||
TrEMBL | A0A1S3DVW3 | 1e-129 | A0A1S3DVW3_CICAR; BEL1-like homeodomain protein 9 isoform X1 | ||||
TrEMBL | A0A1S3DW10 | 1e-129 | A0A1S3DW10_CICAR; BEL1-like homeodomain protein 9 isoform X2 | ||||
STRING | XP_004515686.1 | 1e-130 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02030.1 | 2e-35 | TALE family protein |