PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012567317.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 255aa MW: 29677.7 Da PI: 8.2818

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012567317.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.6	1.3e-20	11	97	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+ +Y+ ++GF vrk++ +k+k+++ i + +fvCskeg r+ +k++ + +raetrt+Cka++ + + +g+++v++++++HnH+l+ XP_012567317.1 11 QFWLTYSAHAGFGVRKRYANKNKDDT-ISSCRFVCSKEGVRKIDKRD-IFVNIHRAETRTDCKARISLVCK-NGNFVVHEFVEDHNHPLQ 97 69*****************96555.*************999.888899**********999.9*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-17	11	97	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MKFDNINVAY QFWLTYSAHA GFGVRKRYAN KNKDDTISSC RFVCSKEGVR KIDKRDIFVN 60 IHRAETRTDC KARISLVCKN GNFVVHEFVE DHNHPLQLPE TTHMLASHRK ITEVQAYEID 120 LADDSGLRQK STFQLMSTHA RNRANIGFTQ LDVKNYLSAR RQRSMMYGDV GCLSQYFQRQ 180 LLENLFFFHA YQMDIEEQII NVFWCDANMV LDYGYFGDVV SLDTTYCTNH ANRPFALFSG 240 FNHYRSLIIF GAALL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012567317.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027191115.1	1e-180	protein FAR-RED IMPAIRED RESPONSE 1-like
Refseq	XP_027193270.1	0.0	LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5, partial
TrEMBL	A0A3Q7YFU8	1e-179	A0A3Q7YFU8_CICAR; protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A3Q7YH29	0.0	A0A3Q7YH29_CICAR; LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5
STRING	XP_004490690.1	1e-165	(Cicer arietinum)
STRING	XP_004506622.1	1e-166	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-43	FAR1-related sequence 5