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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011400946.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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Family | SBP | ||||||||
Protein Properties | Length: 150aa MW: 16749.3 Da PI: 8.3319 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 58.3 | 2e-18 | 3 | 44 | 36 | 77 |
TTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 36 sgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +g++ rfCqqC+r+ l++fD++krsCr rL++hn+rrrk+ XP_011400946.1 3 NGVRSRFCQQCGRYQPLEDFDDTKRSCRVRLQRHNQRRRKRP 44 7899***********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 17.212 | 1 | 43 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-14 | 2 | 42 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-10 | 3 | 30 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.36E-15 | 3 | 45 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MRNGVRSRFC QQCGRYQPLE DFDDTKRSCR VRLQRHNQRR RKRPNEEEDG LRPLVPGAPL 60 GQRDVQVMQE ALQLASNALL QARPVMLLLL KGYAGMFNYA LEDASLRPLP DPCTAADGAL 120 DPGTMAAFMP LPGGAMGEGI HPSLEQQMLF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011400946.1 | 1e-106 | Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A087SQD5 | 1e-104 | A0A087SQD5_AUXPR; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | A0A3M7KR21 | 1e-103 | A0A3M7KR21_AUXPR; Uncharacterized protein | ||||
STRING | A0A087SQD5 | 1e-105 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP20 | 12 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-07 | SBP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 23616666 |