PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_011400946.1

Organism

Auxenochlorella protothecoides

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella

Family

Protein Properties

Length: 150aa MW: 16749.3 Da PI: 8.3319

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011400946.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	58.3	2e-18	3	44	36	77
TTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 36 sgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +g++ rfCqqC+r+ l++fD++krsCr rL++hn+rrrk+ XP_011400946.1 3 NGVRSRFCQQCGRYQPLEDFDDTKRSCRVRLQRHNQRRRKRP 44 7899***********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	17.212	1	43	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.1E-14	2	42	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	2.2E-10	3	30	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.36E-15	3	45	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MRNGVRSRFC QQCGRYQPLE DFDDTKRSCR VRLQRHNQRR RKRPNEEEDG LRPLVPGAPL 60 GQRDVQVMQE ALQLASNALL QARPVMLLLL KGYAGMFNYA LEDASLRPLP DPCTAADGAL 120 DPGTMAAFMP LPGGAMGEGI HPSLEQQMLF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011400946.1	1e-106	Squamosa promoter-binding-like protein 9
TrEMBL	A0A087SQD5	1e-104	A0A087SQD5_AUXPR; Squamosa promoter-binding-like protein 9
TrEMBL	A0A3M7KR21	1e-103	A0A3M7KR21_AUXPR; Uncharacterized protein
STRING	A0A087SQD5	1e-105	(Auxenochlorella protothecoides)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP20	12	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-07	SBP family protein

Link Out ? help Back to Top
Entrez Gene	23616666