PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011400225.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 25062.8 Da PI: 4.3008 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.5 | 4.5e-15 | 22 | 63 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + +g+++AeIrdp+ r r +lg+f+taeeAa a++aa+++++g XP_011400225.1 22 P-WGKFAAEIRDPT----RgSRLWLGTFDTAEEAALAYDAAARRIRG 63 5.**********84....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.361 | 5 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-17 | 21 | 72 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.96E-12 | 21 | 73 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.4E-25 | 21 | 72 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-25 | 21 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-8 | 21 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MLIAPYPGLM LAGGELYEAG RPWGKFAAEI RDPTRGSRLW LGTFDTAEEA ALAYDAAARR 60 IRGGAAVCNF DDLETAELVR LYGAPALPED ADPGASLASA ASAATRFAPG TSAPAALYGP 120 GVARDARGLL AVLGGVARGE AGGPPNPRRP HAPGESSDSL EHSPDEGGEE EEMVLGAMDM 180 DDEEEIAAIL LRLQDTQLQS APSADVSAAG AADKDSAVAG RRYGTRTAAG LKVGRRYTDL 240 LGE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 21 | 70 | 12 | 62 | ATERF1 |
3gcc_A | 2e-17 | 21 | 70 | 12 | 62 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011400225.1 | 1e-168 | Ethylene-responsive transcription factor | ||||
TrEMBL | A0A087SNF4 | 1e-167 | A0A087SNF4_AUXPR; Ethylene-responsive transcription factor | ||||
STRING | A0A087SNF4 | 1e-168 | (Auxenochlorella protothecoides) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP132 | 15 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33710.1 | 4e-10 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 23615919 |