PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011399211.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB
Protein Properties Length: 363aa    MW: 39404.7 Da    PI: 9.4722
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011399211.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.6e-15750448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     WT+eEde l ++v  +G++ W++I++++   ++ kqc+ rw ++l
   XP_011399211.1  7 WTPEEDEELQHLVDAHGSKKWALISSKLR-SKSSKQCRRRWKNFL 50
                     *****************************.*************97 PP
2Myb_DNA-binding46.86.8e-155898345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +W+t+Ed +l  a+++lG++ W+ I+r +g  Rt++ +k+rw+
   XP_011399211.1 58 SWSTDEDAQLMAAHAELGNR-WTEISRIFG-DRTDNAVKNRWH 98
                     7*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.312150IPR017930Myb domain
SMARTSM007173.6E-12352IPR001005SANT/Myb domain
SuperFamilySSF466893.75E-25697IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-15755IPR009057Homeodomain-like
PfamPF139211.2E-14767No hitNo description
CDDcd001678.80E-9750No hitNo description
PROSITE profilePS5129419.75351105IPR017930Myb domain
SMARTSM007174.0E-1355103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-1656103IPR009057Homeodomain-like
CDDcd001671.13E-1058101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MPTALIWTPE EDEELQHLVD AHGSKKWALI SSKLRSKSSK QCRRRWKNFL SINAKTCSWS  60
TDEDAQLMAA HAELGNRWTE ISRIFGDRTD NAVKNRWHAL VRKHPRLTEM GSPSTDPKRA  120
RRGPPGQAAG HQLNPHHHQQ QQGYPVAGVR GGAVLPSPFE QNSLAPSMAV PHGAVLGPHG  180
MGTANVAPGH GQGPPAPLAI RVSRELLTPW EVQLAQQVNA MAAPIHIEML DPEQGALPPP  240
PAHYKLPELA SDPLAARTSW RQLVEGGGLE PTPPDASGEH RSLLRRLMSR GLEARGSWDV  300
GRLLSLDLDP ELAQRLRGGP GQAGAYPNAS AGQEPGVYLN PTFSSAELQL LVDALLPKPS  360
MAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-26710310106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00259DAPTransfer from AT2G02820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011399211.10.0Myb-related protein B
TrEMBLA0A087SKR10.0A0A087SKR1_AUXPR; Myb-related protein B
STRINGA0A087SKR10.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.16e-19myb domain protein 118