PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011397886.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family ERF
Protein Properties Length: 456aa    MW: 43990.7 Da    PI: 12.1325
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011397886.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-20393441355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp     +  +r +lg+f+taeeAa+a++aa+++++g
  XP_011397886.1 393 YRGVRQRP-WGKWAAEIRDP-----TvgARRWLGTFDTAEEAARAYDAAARAIRG 441
                     9*******.**********9.....4459***********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-19392445IPR016177DNA-binding domain
PROSITE profilePS5103222.102392450IPR001471AP2/ERF domain
SMARTSM003806.4E-29392453IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-26392445IPR001471AP2/ERF domain
CDDcd000181.40E-15393424No hitNo description
PfamPF008471.4E-12393441IPR001471AP2/ERF domain
PRINTSPR003674.1E-11393404IPR001471AP2/ERF domain
PRINTSPR003674.1E-11415431IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034059Biological Processresponse to anoxia
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005730Cellular Componentnucleolus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MYTGCGHRLP PPTHPQAPGA GGPRPQAHMV MPSPQPGFAF PAAASGAAPS PGPGATGPGA  60
TPPLPPGPGF HLSAQPAVSP RPGRGFAVPA QVPHPGASPA PGSAPSAPAA PAVPQPGTPA  120
ASAAAAAALA AAGPRGPPFF HFRPGFQFPP GFQFPPGFQL PPGFALRPAM PGPPGSRPPG  180
VAAFGTPQQQ ATAAALMMHQ QQILAAAAAH HQQAQANAAA AAAAAAAAGG AAGGAAAPQG  240
GAAPHRALPL TQLAAQQKAM VASAAAAVAA AQAASSAAAA AAAASPASGP GRGPGAVAPG  300
TPPGLIPATS PGSLGSSPSL LPAPASVSPA GSGELRVQGA LSAELRASPR HGDGEVASGL  360
LPPDATAAAA PEPMVPSGVP PPVVVSKGRN KTYRGVRQRP WGKWAAEIRD PTVGARRWLG  420
TFDTAEEAAR AYDAAARAIR GAHANWTQGP TPPPAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-173924411464Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011397886.10.0Ethylene-responsive transcription factor 1
TrEMBLA0A087SGZ40.0A0A087SGZ4_AUXPR; Ethylene-responsive transcription factor 1
STRINGA0A087SGZ40.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.15e-15ERF family protein