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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_011396941.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
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| Family | bHLH | ||||||||
| Protein Properties | Length: 161aa MW: 17434.8 Da PI: 8.7803 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 26.6 | 1.1e-08 | 7 | 55 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
a+ rE+ RR+r+N++feeL +l + +++ K + +++ A++ + +L
XP_011396941.1 7 AKATREKARRERLNECFEELARLCDPT--GRGVKTDRVSVIADAIRVLTQL 55
6788*******************9886..6***************999988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 11.293 | 3 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.49E-6 | 6 | 59 | No hit | No description |
| SuperFamily | SSF47459 | 7.72E-12 | 6 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 2.0E-6 | 7 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.8E-9 | 8 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.8E-7 | 9 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 161 aa Download sequence Send to blast |
MSTAAVAKAT REKARRERLN ECFEELARLC DPTGRGVKTD RVSVIADAIR VLTQLRVENN 60 QLRQLNKFLE ERVSNLERAR AQNVYQQSLL QQRADSLLQQ HAGAGMHTGV LAAGPGRIAE 120 ALGGLTGVEL TARLEDDAGA GLAWLPAPNA SEDSKLRPPA A |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011396941.1 | 1e-113 | Transcription factor | ||||
| TrEMBL | A0A087SEA6 | 1e-111 | A0A087SEA6_AUXPR; Transcription factor | ||||
| STRING | A0A087SEA6 | 1e-112 | (Auxenochlorella protothecoides) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Chlorophytae | OGCP5649 | 7 | 7 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G51070.1 | 2e-11 | bHLH family protein | ||||
| Link Out ? help Back to Top | |
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| Entrez Gene | 23611635 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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