PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011396796.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family HSF
Protein Properties Length: 263aa    MW: 28360.7 Da    PI: 6.9792
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011396796.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.72.1e-34231142102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+ye++ed++++e+isw+e+g+sf+v+++ efa+++L+ +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll  
  XP_011396796.1  23 FIIKTYELIEDPSTDEIISWNEDGTSFIVWKNAEFARDLLHLHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANELFLRGQRHLLGG 108
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  XP_011396796.1 109 IVRRKP 114
                     **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-3815106IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.31E-3418112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-5519112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.6E-3023112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MNTRRGGQAQ REPARAPNPP APFIIKTYEL IEDPSTDEII SWNEDGTSFI VWKNAEFARD  60
LLHLHFKHSN FSSFVRQLNT YGFRKVDPDR WEFANELFLR GQRHLLGGIV RRKPAADVGR  120
PGGSAPGRDA GALSAVELGA YGGLAAEVET LQRDKRLLVT EVIRLRQAQA GTEATLHGLQ  180
HRLDVTEARQ QQMVGFLAKA MHHPALVQQF MGGAPALQRI DDGRSDEGSV EDSVAGQGAA  240
SSTSTAGADS GVTGGAPPAT TSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-221811225129Heat shock factor protein 1
5d5v_B1e-221811225129Heat shock factor protein 1
5d5v_D1e-221811225129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396796.10.0Heat stress transcription factor A-1d
SwissprotQ9LQM74e-71HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A087SDW40.0A0A087SDW4_AUXPR; Heat stress transcription factor A-1d
STRINGA0A087SDW40.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.14e-69heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]