PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011396046.1
Organism
Auxenochlorella protothecoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Auxenochlorella
Family MYB
Protein Properties Length: 570aa    MW: 61101.6 Da    PI: 10.0628
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011396046.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.8e-13853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G ++W++I++ +  ++++kqck rw+ +l
   XP_011396046.1  8 GVWKNTEDEILKAAVMKYGLNQWARISSLLT-RKSAKQCKARWYEWL 53
                     78****************************9.************986 PP
2Myb_DNA-binding34.16.3e-1160103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
   XP_011396046.1  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPVQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.548153IPR017930Myb domain
SMARTSM007173.6E-14655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-18960IPR009057Homeodomain-like
PfamPF139212.8E-131070No hitNo description
CDDcd001672.26E-121053No hitNo description
SuperFamilySSF466898.63E-2233113IPR009057Homeodomain-like
PROSITE profilePS5129420.40954107IPR017930Myb domain
CDDcd116595.52E-3155106No hitNo description
SMARTSM007174.6E-1358105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-1461104IPR009057Homeodomain-like
PfamPF118312.4E-10397465IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MRILIKGGVW KNTEDEILKA AVMKYGLNQW ARISSLLTRK SAKQCKARWY EWLDPAIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPVQCLERYE KLLDMAAGKE TYDPTDDPRR  120
LRPGEIDPNP ESKPARPDPI DMDEDEKEML SEARARLANT KGKKAKRKAR EKQLEEARRL  180
ATLQKKRELK AAGIEVRERT RRGGAIDYSK EVPFERRAAA GFFDTREEAT RTSEMQEDFR  240
PITVDELEGR KRKDIEKELI KADLAKARVA ERANAPAALA RALAANEASA GPVRRGKLML  300
PAPAVTDEEL EALARGGYAA ADRDADVAAG GSAATPNLAA LTAGATPLLG GENPVLHPSD  360
FSGVTPRATP AATPGTHALG GTPAATLGTH ALGGVAIAAT PRGGRVSGGG ATPAPVPTPL  420
RDALGLNEAA ASASSKREEA ARLALLRNDL RAGLAQLPGP RNEYQADALR RASALLGAEL  480
AALLAYEAEA FPAKAEKGKG KGAAAAHQAA SLPPLEQLAA REAEAGPARV AELAALVAAQ  540
RAREAALQDR YRAARDAVLD ARRPLPQAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-14624653491Cell division cycle 5-like protein
5xjc_L1e-14624653491Cell division cycle 5-like protein
5yzg_L1e-14624653491Cell division cycle 5-like protein
5z56_L1e-14624653491Cell division cycle 5-like protein
5z57_L1e-14624653491Cell division cycle 5-like protein
5z58_L1e-14624653491Cell division cycle 5-like protein
6ff4_L1e-14624653491Cell division cycle 5-like protein
6ff7_L1e-14624653491Cell division cycle 5-like protein
6icz_L1e-14624653491Cell division cycle 5-like protein
6id0_L1e-14624653491Cell division cycle 5-like protein
6id1_L1e-14624653491Cell division cycle 5-like protein
6qdv_O1e-14624653491Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1402409GGRVSGGG
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011396046.10.0Cell division cycle 5-like protein
SwissprotP929481e-173CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A087SBS20.0A0A087SBS2_AUXPR; Cell division cycle 5-like protein
STRINGA0A087SBS20.0(Auxenochlorella protothecoides)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP10401617
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-126cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]