PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011102313.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 421aa MW: 45254.7 Da PI: 7.8113

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011102313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.7e-09	253	301	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_011102313.1 253 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 301 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.85E-11	248	305	No hit	No description
SuperFamily	SSF47459	4.84E-17	248	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.485	250	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.3E-17	251	317	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-6	253	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-10	256	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MGWTSNSMLR GGMFLPTVPG LLPQNLPHFP ADLAFIERAA RFSCFSGGNF GGVMNPFSAP 60 GPINPYSRGL GPMQGPDEVF GGNGLRPLPG MQSQGHETDV TEVSKEASLP GRKPGNEGSP 120 SKNEKKSESL LRSHDEAKHG VGVSGNESDE AEFSGRGGQE ELNGPAVESS GKGLGSKRRK 180 RVGQDTEHDE NNEAPRPSID MAKGMAETKE KGDRNPTSIS KPGGKHGKQS SQGSDPPKEE 240 YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL 300 QRQVEFLSMK LATVNPRLDF NIEGFLAKDI LQSRAGMSSS LAFPGLIQAG LLSNSSETLR 360 RPISLQSPAI SGGFKEPTSQ GPNVWEDELH NVVHMGFNSS APLNTQDLSG SLPPGHMKAE 420 P

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MGWTSNSMLR GGMFLPTVPG LLPQNLPHFP ADLAFIERAA RFSCFSGGNF GGVMNPFSAP  60
GPINPYSRGL GPMQGPDEVF GGNGLRPLPG MQSQGHETDV TEVSKEASLP GRKPGNEGSP  120
SKNEKKSESL LRSHDEAKHG VGVSGNESDE AEFSGRGGQE ELNGPAVESS GKGLGSKRRK  180
RVGQDTEHDE NNEAPRPSID MAKGMAETKE KGDRNPTSIS KPGGKHGKQS SQGSDPPKEE  240
YIHVRARRGQ ATNSHSLAER VRREKISERM KFLQDLVPGC SKVTGKAVML DEIINYVQSL  300
QRQVEFLSMK LATVNPRLDF NIEGFLAKDI LQSRAGMSSS LAFPGLIQAG LLSNSSETLR  360
RPISLQSPAI SGGFKEPTSQ GPNVWEDELH NVVHMGFNSS APLNTQDLSG SLPPGHMKAE  420
P

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011102313.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011102313.1	0.0	transcription factor bHLH49-like isoform X2
TrEMBL	A0A2G9I0E5	0.0	A0A2G9I0E5_9LAMI; Uncharacterized protein
STRING	XP_006484279.1	1e-177	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	4e-96	bHLH family protein