PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011102227.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 364aa    MW: 40213.8 Da    PI: 6.3186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011102227.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.56.5e-154594255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+  E+rRR++iN++f+ Lrel+P++    ++K + a+ L ++++Y++ Lq
  XP_011102227.1 45 RSKHSVTEQRRRSKINERFQILRELIPHS----DQKRDTASFLLEVIQYVQFLQ 94
                    899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-1841115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-2241115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.0314393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-144598No hitNo description
PfamPF000103.0E-124594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-114999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MKSGKGHQDE EEEEEEDKEF GERHYTPSAN NAKDKKNSDK ANAIRSKHSV TEQRRRSKIN  60
ERFQILRELI PHSDQKRDTA SFLLEVIQYV QFLQEKVQKY EGSYQPWSSE PTKLMPWRNS  120
HWRVQSFVGQ AQTVKNGSGP GSIFPGRFDE NSGAVPSTVE PCQQNPIESD HVRDTSCRPI  180
DLQTELPIKA MGMAELQATL PISVANDGAF SHTLHGPPPN AQSTECPSAA DPLNPQDELA  240
IQGGTISISS VYSQGLLNSL TQALQSTGVD LSQASISVQI NLGKRANRGS NPGISIPKVC  300
TVQYVIQIEA IIFTPTPRSL GSPMPQTNLS LFQFPMPSSN QAVGTFQDAC NSEDLDQAQK  360
RRKI
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011102227.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547287.10.0LOW QUALITY PROTEIN: transcription factor BIM2-like
SwissprotQ9CAA41e-102BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0H3Y8Y91e-164A0A0H3Y8Y9_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.L01158.1.p1e-136(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.18e-93BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]