 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_011101908.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
| Family |
MYB |
| Protein Properties |
Length: 309aa MW: 35161.1 Da PI: 9.9571 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_011101908.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 58.3 | 1.8e-18 | 19 | 64 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++
XP_011101908.1 19 RGHWRPAEDEKLRQLVQQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 64
899*****************************.***********996 PP
|
| 2 | Myb_DNA-binding | 57.7 | 2.6e-18 | 71 | 114 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r ++++eE+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+
XP_011101908.1 71 RRPFSEEEEERLLAAHRIHGNK-WALISRLFP-GRTDNAVKNHWHV 114
679*******************.*********.***********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MDDQTTCGGS NDDPRTCPRG HWRPAEDEKL RQLVQQYGPQ NWNSIAEKLQ GRSGKSCRLR 60
WFNQLDPRIN RRPFSEEEEE RLLAAHRIHG NKWALISRLF PGRTDNAVKN HWHVIMARKQ 120
REKSKLCGSK RTTLDQDNYN VALPHSKSPT TYIFRRKNSR LQEDHDPFGS KISFENGGIL 180
DLHSQSKDKI FSMSSFSGSY TPWPNNLSPD LFGTKSYKSP SSASIGSNHQ TNFSIFSPNE 240
DSVSALNNKR TLSNTFSCLD YGSKINRDFS SIGENSLPFG KTRTSVNQQQ LEEKKNVPFI 300
DFLGVGISS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1a5j_A | 7e-31 | 19 | 119 | 7 | 107 | B-MYB |
| 1gv2_A | 6e-31 | 19 | 119 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 2e-30 | 19 | 119 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 2e-30 | 19 | 119 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 6e-31 | 19 | 119 | 4 | 104 | C-Myb DNA-Binding Domain |
| 1msf_C | 6e-31 | 19 | 119 | 4 | 104 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KF059459 | 1e-115 | KF059459.1 Salvia miltiorrhiza MYB-related transcription factor (MYB105) mRNA, complete cds. |
