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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011101542.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NAC | ||||||||
Protein Properties | Length: 398aa MW: 44591.1 Da PI: 5.1417 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.8 | 7.6e-52 | 29 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv +yL++ v gk++++ ++++e+d+yk+ePw+L +++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v XP_011101542.1 29 LAPGFRFHPTDEELVRYYLRRIVCGKPFRF-QAVTEIDVYKSEPWELAdySSLKTRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRSVR 122 579*************************99.88**************84347777888************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + k++++g+kktLvf++grap+g+kt+Wvmheyrl XP_011101542.1 123 H-KNQTIGMKKTLVFHSGRAPDGKKTNWVMHEYRL 156 *.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-62 | 26 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.46 | 29 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-28 | 31 | 156 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MEMGQEVVVA AVGTGAKPGR MGAPPPTSLA PGFRFHPTDE ELVRYYLRRI VCGKPFRFQA 60 VTEIDVYKSE PWELADYSSL KTRDLEWYFF SPVDRKYGNG SRLNRATGKG YWKATGKDRS 120 VRHKNQTIGM KKTLVFHSGR APDGKKTNWV MHEYRLCDSE LERAGVSQDA FVLCRIFQKS 180 GLGPPNGDRY APFVEEEWDE DAALVIPGGD AEDDVANGDE ARGDCNELDQ DTSPLSIAPP 240 QVENPIEFPS LPFMCKRERS SEPEPLSLAQ NSKRSKHDDP NSSHANGSED STTTSQDPTT 300 MMMTKNISAL LEFPLLQPVG SKENHPANPP TFDSSNLEKS VPPGYLKFIS NLENEILNVS 360 MEKETLKIEV MRAQAMINIL QSRIDILAKE NEEFRRQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-51 | 28 | 179 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-51 | 28 | 179 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-51 | 28 | 179 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-51 | 28 | 179 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-51 | 28 | 179 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-51 | 28 | 179 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-51 | 28 | 179 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-51 | 28 | 179 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-51 | 28 | 179 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-51 | 28 | 179 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-51 | 28 | 179 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-51 | 28 | 179 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-51 | 28 | 179 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-51 | 28 | 179 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011101542.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC182578 | 2e-47 | AC182578.2 Erythranthe guttata clone MGBa-9K21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101542.1 | 0.0 | NAC domain-containing protein 78 isoform X2 | ||||
Swissprot | Q9SQX9 | 1e-112 | NAC50_ARATH; NAC domain containing protein 50 | ||||
TrEMBL | A0A2G9GMA1 | 0.0 | A0A2G9GMA1_9LAMI; Uncharacterized protein | ||||
STRING | XP_009619467.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 1e-115 | NAC domain containing protein 50 |
Publications ? help Back to Top | |||
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