PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101541.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family NAC
Protein Properties Length: 399aa    MW: 44690.2 Da    PI: 5.1417
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101541.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.31.1e-51291571128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     l+pGfrFhPtdeelv +yL++ v gk++++ ++++e+d+yk+ePw+L     ++k+++ ewyfFs+ d+ky +g+r nrat +gyWkatgkd++v
  XP_011101541.1  29 LAPGFRFHPTDEELVRYYLRRIVCGKPFRF-QAVTEIDVYKSEPWELAVdysSLKTRDLEWYFFSPVDRKYGNGSRLNRATGKGYWKATGKDRSV 122
                     579*************************99.88**************843456666778************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + k++++g+kktLvf++grap+g+kt+Wvmheyrl
  XP_011101541.1 123 RH-KNQTIGMKKTLVFHSGRAPDGKKTNWVMHEYRL 157
                     **.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-6126180IPR003441NAC domain
PROSITE profilePS5100556.54229180IPR003441NAC domain
PfamPF023659.3E-2831157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEMGQEVVVA AVGTGAKPGR MGAPPPTSLA PGFRFHPTDE ELVRYYLRRI VCGKPFRFQA  60
VTEIDVYKSE PWELAVDYSS LKTRDLEWYF FSPVDRKYGN GSRLNRATGK GYWKATGKDR  120
SVRHKNQTIG MKKTLVFHSG RAPDGKKTNW VMHEYRLCDS ELERAGVSQD AFVLCRIFQK  180
SGLGPPNGDR YAPFVEEEWD EDAALVIPGG DAEDDVANGD EARGDCNELD QDTSPLSIAP  240
PQVENPIEFP SLPFMCKRER SSEPEPLSLA QNSKRSKHDD PNSSHANGSE DSTTTSQDPT  300
TMMMTKNISA LLEFPLLQPV GSKENHPANP PTFDSSNLEK SVPPGYLKFI SNLENEILNV  360
SMEKETLKIE VMRAQAMINI LQSRIDILAK ENEEFRRQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-502818016165NO APICAL MERISTEM PROTEIN
1ut4_B6e-502818016165NO APICAL MERISTEM PROTEIN
1ut7_A6e-502818016165NO APICAL MERISTEM PROTEIN
1ut7_B6e-502818016165NO APICAL MERISTEM PROTEIN
3swm_A7e-502818019168NAC domain-containing protein 19
3swm_B7e-502818019168NAC domain-containing protein 19
3swm_C7e-502818019168NAC domain-containing protein 19
3swm_D7e-502818019168NAC domain-containing protein 19
3swp_A7e-502818019168NAC domain-containing protein 19
3swp_B7e-502818019168NAC domain-containing protein 19
3swp_C7e-502818019168NAC domain-containing protein 19
3swp_D7e-502818019168NAC domain-containing protein 19
4dul_A6e-502818016165NAC domain-containing protein 19
4dul_B6e-502818016165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101541.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1825782e-47AC182578.2 Erythranthe guttata clone MGBa-9K21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101541.10.0NAC domain-containing protein 78 isoform X1
SwissprotQ9SQX91e-112NAC50_ARATH; NAC domain containing protein 50
TrEMBLA0A2G9GMA10.0A0A2G9GMA1_9LAMI; Uncharacterized protein
STRINGXP_009619467.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31402448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.21e-114NAC domain containing protein 50
Publications ? help Back to Top
  1. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]