PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011101488.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 304aa    MW: 32970.2 Da    PI: 4.8394
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011101488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053277300123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ C+++F +   L++H +  H
  XP_011101488.1 277 HSCKSCNRTFGSEQALESHSKAkH 300
                     79*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.4E-6277300IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.946277304IPR007087Zinc finger, C2H2
PROSITE patternPS000280279300IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEFWGVEVKS GEPLKVLSGD GMVLHLSQAC LGELKKEKGN ESVCLFVNVD GKKLVLGTLF  60
TEKLPQQQFD LVFDQDFELS HNWKSGSVYF FGYKASNPFE EDALPEGESD DSESEENIPL  120
SIAKNGKPES KAKQEKPVEA EKASAAKGKE SDAGKKKGKL VEPNKDVKSK EDNESSDEDV  180
MSDADDDSED EDDEDESDDE SDESNKESPK KVEPSKKRPV ESATKTPVPS KKAKATPQKT  240
DGKKSGGHVD TPYPAKQAGK TAANKPNQQT PKSGGSHSCK SCNRTFGSEQ ALESHSKAKH  300
SGGK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011101488.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101488.10.0histone deacetylase HDT1
SwissprotQ6V9I61e-101HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A2G9G0301e-140A0A2G9G030_9LAMI; Histone deacetylase
STRINGMigut.L01752.1.p1e-131(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.28e-26histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]