PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011101342.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 20213.7 Da PI: 8.3659 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 144.3 | 3.5e-45 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++C+++pyfp e+p+kfanvhk+FGasnv+kll+++p+++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++el+ XP_011101342.1 10 PCAACKFLRRKCTPGCIFSPYFPPEEPQKFANVHKIFGASNVSKLLHDIPPHQREDAVNSLAYEAEARVRDPVYGCVGAITFLQRQVDRLQKELD 104 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_011101342.1 105 AANA 108 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.682 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-44 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MASSSSYNSP CAACKFLRRK CTPGCIFSPY FPPEEPQKFA NVHKIFGASN VSKLLHDIPP 60 HQREDAVNSL AYEAEARVRD PVYGCVGAIT FLQRQVDRLQ KELDAANADL IRYACNGGLH 120 QPSTNPMVVP PPRQRPIVEH NRRIANDGGS GFYQTPSSFS FPYYNSPWND HYGPHGGGFG 180 GSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-66 | 3 | 129 | 4 | 130 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-66 | 3 | 129 | 4 | 130 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011101342.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011101342.1 | 1e-135 | LOB domain-containing protein 25-like | ||||
Refseq | XP_020546974.1 | 1e-135 | LOB domain-containing protein 25-like | ||||
Refseq | XP_020546975.1 | 1e-135 | LOB domain-containing protein 25-like | ||||
Swissprot | Q9FML4 | 2e-67 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A2G9H8M2 | 2e-87 | A0A2G9H8M2_9LAMI; Uncharacterized protein | ||||
STRING | EOY20851 | 1e-84 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 5e-70 | LBD family protein |
Publications ? help Back to Top | |||
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