PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100718.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB
Protein Properties Length: 321aa    MW: 36522.1 Da    PI: 5.9906
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100718.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-173380148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed  l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
   XP_011100718.1 33 RGPWTVDEDFTLINYIAHHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 80
                     89********************************************97 PP
2Myb_DNA-binding51.32.7e-1686129146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_011100718.1  86 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 129
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.8752880IPR017930Myb domain
SuperFamilySSF466892.81E-3030127IPR009057Homeodomain-like
SMARTSM007173.5E-143282IPR001005SANT/Myb domain
PfamPF002496.9E-163380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-213487IPR009057Homeodomain-like
CDDcd001671.10E-103580No hitNo description
PROSITE profilePS5129423.24681135IPR017930Myb domain
SMARTSM007171.3E-1485133IPR001005SANT/Myb domain
PfamPF002495.5E-1586129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-2388134IPR009057Homeodomain-like
CDDcd001673.72E-7106129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDHHHHHQDA NKLVSRMNYM SDDQEEELTD IRRGPWTVDE DFTLINYIAH HGEGRWNSLA  60
RSAGLKRTGK SCRLRWLNYL RPDVRRGNIT LEEQLLILEL HSRWGNRWSK IAQHLPGRTD  120
NEIKNYWRTR VQKHAKQLKC DVNSKQFKDT MRYLWMPRLV ERIQAAAASS SGGGTTAAVA  180
SSSTNTSAYL FNNQNSTTTL DMGSSTINTL GQPNTLTPEN SSAAASSDSL GTPVSELTEC  240
YNNYPVVNNN QDYFPGNQNM SYSYGDQSLT SPTTAGYFSQ GLEFMEQNSE WMDGADDGLD  300
SLWNVDDMWF LQQQQQFNSN A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-243012724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100718.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100718.10.0transcription factor MYB108
SwissprotQ9FGY34e-96MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A2G9HKQ11e-138A0A2G9HKQ1_9LAMI; Transcription factor, Myb superfamily
STRINGMigut.G00025.1.p1e-124(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.18e-93myb domain protein 108
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]