PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011100551.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 415aa MW: 45166.2 Da PI: 5.3035 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.7 | 8.6e-07 | 5 | 44 | 6 | 39 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ ++e++ +++C+++ lC +C + H+ H++ XP_011100551.1 5 CDFCGEQRSIIYCRSDAASLCLSCDRNVHSAnalskrHSR 44 *****************************65667777765 PP | |||||||
2 | zf-B_box | 22.4 | 2.5e-07 | 46 | 88 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +C++++++++ + C + ++ lC++C +H g H+++ XP_011100551.1 46 LVCERCNSQPAFIRCIEEKVSLCQNCDWVGHAGsnispgHKRQ 88 68*****************************888888888765 PP | |||||||
3 | CCT | 62 | 1.9e-21 | 358 | 401 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+k RkFeKk+rY+sRKa+A+ R RvKGrFvk+ XP_011100551.1 358 RNDAVMRYKEKKKARKFEKKVRYASRKARADVRRRVKGRFVKAG 401 999**************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.556 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.12E-6 | 4 | 47 | No hit | No description |
SMART | SM00336 | 5.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.83 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00113 | 47 | 78 | No hit | No description |
SMART | SM00336 | 1.4 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 4.7E-16 | 358 | 400 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.309 | 358 | 400 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 415 aa Download sequence Send to blast |
MGYLCDFCGE QRSIIYCRSD AASLCLSCDR NVHSANALSK RHSRTLVCER CNSQPAFIRC 60 IEEKVSLCQN CDWVGHAGSN ISPGHKRQAV NCYSGCPSAA ELSSIWSFLL DFPSVGDSTC 120 EQGMGSMSIT DNRSMDCQGP HGKNNVQDAS FLGEASDVHN VEMDKSTVWM ESLNHLHDPR 180 QQNVDQAAGS TSSAVPKVIL PGAKEKEAAV CEDDDFYDVF NMDEVDLSIE NYEELFGAAL 240 DNPQLFGNDS IEGIFGTKDM SASNCQGAYA AEGSSIGGVN VMQPACSNAA SADSVLSCKT 300 DPNLYFARQA HSSLSFSGLT GESSAGDYQD CGVSSKPMMG EPPWYPPGTE SSMPPTSRND 360 AVMRYKEKKK ARKFEKKVRY ASRKARADVR RRVKGRFVKA GDAYDYDPLS PSRSC |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011100551.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100551.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_011100552.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_011100553.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 1e-141 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A068LFB8 | 0.0 | A0A068LFB8_TECGR; CONSTANS-like protein 9 | ||||
STRING | Migut.M00064.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1270 | 24 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-121 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
---|---|---|---|
|