PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100372.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 488aa MW: 54307.7 Da PI: 7.0296 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.5 | 3.6e-16 | 313 | 359 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq XP_011100372.1 313 MHNLSERRRRDRINEKMRALQELIPHS-----NKSDKASMLDEAIEYMKSLQ 359 7*************************7.....59*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.07E-20 | 307 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.65 | 309 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.98E-17 | 312 | 363 | No hit | No description |
Pfam | PF00010 | 1.5E-13 | 313 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-20 | 313 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-16 | 315 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0009693 | Biological Process | ethylene biosynthetic process | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MDNCLPDWNT DLGVEIPSPI QRKSLGLDSE LVELLWQNGE VVLHSQTNRK QSFDPTKSKQ 60 VHKPDQLTSR ASENPNNLIQ DDETVSWINC AIDESFEKEF CANFLPEIPS SIPIEANKLP 120 EKYDGEKVSK FGASNVNNIS PGQQRIDFAR PPPRFGTCDV AHQRKNLGGI RKQGDLQLPV 180 KNQACSVMTI GSSHCSSNQV VNEVDMTWAS SCGIGSRDIS AWTDENYGRK VSPPCESTER 240 ETLGQAITSS SGGSGSSFWK TSSQSNDTNR NKRKSRDVEE SECQSDATEL ESAAGNKSSK 300 KSGTTRRNRV AEMHNLSERR RRDRINEKMR ALQELIPHSN KSDKASMLDE AIEYMKSLQM 360 QLQWMWMGSG MATMMLPGMQ HYMSRYGMRM GPPMLPAIQN FMRVSRLPLV DQAMSIAPTA 420 NQASISHSPV NYQNQMQNAV FPEQYANYMG FHSMSNTSQA MNMFNYGSHS AQQIQALAPP 480 GNGNGSTA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 317 | 322 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00082 | ChIP-seq | Transfer from AT3G59060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100372.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100371.1 | 0.0 | transcription factor PIF4 | ||||
Refseq | XP_011100372.1 | 0.0 | transcription factor PIF4 | ||||
TrEMBL | A0A2G9G956 | 0.0 | A0A2G9G956_9LAMI; Uncharacterized protein | ||||
TrEMBL | A0A2G9HIV6 | 0.0 | A0A2G9HIV6_9LAMI; Uncharacterized protein | ||||
STRING | XP_009602219.1 | 1e-164 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59060.1 | 6e-44 | phytochrome interacting factor 3-like 6 |