PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100371.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family bHLH
Protein Properties Length: 488aa    MW: 54307.7 Da    PI: 7.0296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.6e-16313359455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  XP_011100371.1 313 MHNLSERRRRDRINEKMRALQELIPHS-----NKSDKASMLDEAIEYMKSLQ 359
                     7*************************7.....59*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-20307372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.65309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.98E-17312363No hitNo description
PfamPF000101.5E-13313359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-20313367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-16315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009585Biological Processred, far-red light phototransduction
GO:0009693Biological Processethylene biosynthetic process
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDNCLPDWNT DLGVEIPSPI QRKSLGLDSE LVELLWQNGE VVLHSQTNRK QSFDPTKSKQ  60
VHKPDQLTSR ASENPNNLIQ DDETVSWINC AIDESFEKEF CANFLPEIPS SIPIEANKLP  120
EKYDGEKVSK FGASNVNNIS PGQQRIDFAR PPPRFGTCDV AHQRKNLGGI RKQGDLQLPV  180
KNQACSVMTI GSSHCSSNQV VNEVDMTWAS SCGIGSRDIS AWTDENYGRK VSPPCESTER  240
ETLGQAITSS SGGSGSSFWK TSSQSNDTNR NKRKSRDVEE SECQSDATEL ESAAGNKSSK  300
KSGTTRRNRV AEMHNLSERR RRDRINEKMR ALQELIPHSN KSDKASMLDE AIEYMKSLQM  360
QLQWMWMGSG MATMMLPGMQ HYMSRYGMRM GPPMLPAIQN FMRVSRLPLV DQAMSIAPTA  420
NQASISHSPV NYQNQMQNAV FPEQYANYMG FHSMSNTSQA MNMFNYGSHS AQQIQALAPP  480
GNGNGSTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317322ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00082ChIP-seqTransfer from AT3G59060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100371.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100371.10.0transcription factor PIF4
RefseqXP_011100372.10.0transcription factor PIF4
TrEMBLA0A2G9G9560.0A0A2G9G956_9LAMI; Uncharacterized protein
TrEMBLA0A2G9HIV60.0A0A2G9HIV6_9LAMI; Uncharacterized protein
STRINGXP_009602219.11e-164(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.16e-44phytochrome interacting factor 3-like 6