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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100162.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 25662.8 Da PI: 6.7997 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.2 | 1.5e-06 | 153 | 173 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F+++ L H+r+H XP_011100162.1 153 CSVCGKGFPSQKALFGHMRSH 173 ********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.53E-5 | 151 | 175 | No hit | No description |
PROSITE profile | PS50157 | 10.284 | 151 | 173 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.001 | 151 | 173 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.3E-10 | 152 | 175 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 153 | 173 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.7E-4 | 153 | 173 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MTNGNTGGDH GSPSKPTPNP NPNSPRQEEN PRRRSGGANA PPASPRRRGS PSSPPKTRPV 60 MGVPGESAFA PYTKPRSEPG GSGGRGVEGG PGLQGAQVVP VGSGGYGVVA APGALRIGGS 120 PAARKRVRES GAGSTTAAGG NQPGEGAGNV VNCSVCGKGF PSQKALFGHM RSHPDRGWKG 180 AHPPPTFKAE EEFADLHGLN LPEAGRGGDA QEGAADDHQK EDEAAESEEE EEAGDSGKYR 240 LPDLNNPPPP DAN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100162.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011069476.1 | 1e-178 | uncharacterized protein LOC105155299 | ||||
Refseq | XP_011100162.1 | 1e-178 | uncharacterized protein LOC105178395 | ||||
Refseq | XP_011100164.1 | 1e-178 | uncharacterized protein LOC105178398 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9281 | 7 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35700.1 | 2e-13 | C2H2 family protein |