PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100154.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WOX
Protein Properties Length: 284aa    MW: 31881 Da    PI: 6.9619
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100154.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.4e-203293257
                    T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    ++R+t+t++q+++L++l+++   r p+ae+++++++kl    +++ ++V++WFqN++a+e++
  XP_011100154.1 32 STRWTPTTDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 93
                    58*****************8678*************************************97 PP
2Wus_type_Homeobox114.36e-373195265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
     XP_011100154.1 31 SSTRWTPTTDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 95
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-112598IPR009057Homeodomain-like
PROSITE profilePS5007110.5272894IPR001356Homeobox domain
SMARTSM003897.4E-63098IPR001356Homeobox domain
PfamPF000462.0E-173393IPR001356Homeobox domain
CDDcd000863.72E-73395No hitNo description
Gene3DG3DSA:1.10.10.601.5E-73393IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEPHQQAQQQ QQQANDQEGG GKSSSFLCRQ SSTRWTPTTD QIRILKDLYY NNGVRSPTAE  60
QIQRISAKLR QYGKIEGKNV FYWFQNHKAR ERQKKRFTAD IPMHRSNATS HWKNEPDHQF  120
LSPIYNKLSN ITAPPPPGNN FPSSSASSAA GLLSVGNYGY GSVAMEKSFR ECSITPSSNG  180
GGQNFAWIGV DPYSSAYPFL EKRKYASNNA HQTLELEEEE DDDAPPEIET LPLFPMHGDA  240
IKQENDYYNG WRHRSDEDGA TAGGARASLE LSLNSYAARF PTPP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011100154.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1622099e-68AY162209.1 Antirrhinum majus ROSULATA (ROA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100154.10.0protein WUSCHEL
SwissprotQ6YBV14e-94WUS_ANTMA; Protein WUSCHEL
TrEMBLA0A2G9GV801e-125A0A2G9GV80_9LAMI; Uncharacterized protein
STRINGXP_009792214.12e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-43WOX family protein