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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011100103.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 337aa MW: 37155.3 Da PI: 5.0883 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.6e-12 | 162 | 207 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L +++P + kK++K ++L +++Y+k+Lq XP_011100103.1 162 HIMAERKRREKLSQRFLALSSMVPGL-----KKMDKTSVLGDTIKYLKYLQ 207 999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.269 | 157 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.03E-16 | 158 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 162 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-9 | 162 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.35E-11 | 162 | 211 | No hit | No description |
SMART | SM00353 | 4.6E-14 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MQEDSRMSSD QCEFMDYMDE ELAAILAEDF PGSLSPAGSD SSSSSTLITA PGTINSAAAN 60 LCTEPPKVLG LEQPAKERKP NNFSNFSSVK DIDGASSAPV ILNFGNANSP ENCRQAPLVV 120 LDPDKEAVVS EVFINEASRI EKRDGKGNKP RRLRPPSQTY DHIMAERKRR EKLSQRFLAL 180 SSMVPGLKKM DKTSVLGDTI KYLKYLQERV KTLEDQAAKQ TVDSVVFVKR SRIMEDEGSS 240 YEKNRESDEL SSLPEIEARV CDRSILLKIL CEKSKDVLVK VLAEVEKLNL AVVNTSVTPF 300 GSLALDITII AQMDKEMRVT AKDMVTTLRS ALQSAAN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 170 | ERKRRE |
2 | 166 | 171 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011100103.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011100103.2 | 0.0 | transcription factor bHLH18-like isoform X1 | ||||
Swissprot | Q9T072 | 4e-54 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A2G9I4F1 | 1e-119 | A0A2G9I4F1_9LAMI; Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1760 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-48 | bHLH family protein |