PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099803.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 524aa    MW: 58947.6 Da    PI: 5.3752
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.81.7e-2947130186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++e+laL+++r++m+ ++r++ lk+plW+evs+k+ e gf+rs+k+Ckek+en+ k++k++k+g+++r  ++ +++++f+qle
  XP_011099803.1  47 RWPREETLALLKIRSDMDLAFRDSTLKAPLWDEVSRKLGELGFHRSAKKCKEKFENIYKYHKRTKDGRSSR--QNGKNYRFFEQLE 130
                     8*********************************************************************8..55567******97 PP
2trihelix97.51.2e-30355439186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+k ev aLi ++++++ +++++  k+plWeevs  m++ g+ rs+k+Ckekwen+nk+yk+++e++kkr +++s+tcpyf+ le
  XP_011099803.1 355 RWPKAEVEALIMLKTDLDLKYQDSGPKGPLWEEVSTCMKKLGYDRSAKRCKEKWENINKYYKRVRESNKKR-PQDSKTCPYFNMLE 439
                     8*********************************************************************8.99*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.29440104IPR017877Myb-like domain
SMARTSM007174.0E-444106IPR001005SANT/Myb domain
PfamPF138374.1E-1946130No hitNo description
CDDcd122033.82E-2446111No hitNo description
PROSITE profilePS500906.934348412IPR017877Myb-like domain
SMARTSM007170.0069352414IPR001005SANT/Myb domain
PfamPF138373.9E-22354441No hitNo description
CDDcd122036.06E-26354419No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MLDSSVFLEN SGGGGGSGSD GVAVELRNEG GSAGAGDEGD RNSAGNRWPR EETLALLKIR  60
SDMDLAFRDS TLKAPLWDEV SRKLGELGFH RSAKKCKEKF ENIYKYHKRT KDGRSSRQNG  120
KNYRFFEQLE LLDGHFSVPS TPLNQIPSYA METAAIATST PTTSVMAKPI SSSQDFTIPC  180
SNQDPNAEFM SASTSTASSS GKDSEGSVRK KRKLVDYFER LMKDVLQKQE DLQNKFLEAI  240
EKCEKDRIAR EEAWKVQEMA RIKREQEFLA QERAITAAKD AAVLAFLQKI TQQTLPLQMS  300
EILTPLFDKP SDKQENILEK QQGYSQDNGV GETSMHADKQ DHSAGEIAIQ TSSSRWPKAE  360
VEALIMLKTD LDLKYQDSGP KGPLWEEVST CMKKLGYDRS AKRCKEKWEN INKYYKRVRE  420
SNKKRPQDSK TCPYFNMLES LYAKKSKKSE HNSDNGGCNL QPEQILMQMM GQHQQQQQPQ  480
QSIGEYGDSD HQNQEDDAED EQDDDSGDGY QIVANNLSSV ATLE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099803.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099803.10.0trihelix transcription factor GT-2-like
SwissprotQ391171e-120TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2G9H2520.0A0A2G9H252_9LAMI; Transcription factor GT-2
STRINGMigut.H01112.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-123Trihelix family protein