PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HD-ZIP

Protein Properties

Length: 269aa MW: 29917.8 Da PI: 7.9825

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011099420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	121	175	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k q Lee F+++++++ +++++LA++l+L rqV vWFqNrRa+ k XP_011099420.1 121 RKKLRLSKAQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 175 677889***********************************************98 PP
2	HD-ZIP_I/II	120.9	6.7e-39	121	208	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlsk q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +e + XP_011099420.1 121 RKKLRLSKAQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLQKELQEPK 208 69*********************************************************************************99855 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.51E-18	111	178	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.459	117	177	IPR001356	Homeobox domain
SMART	SM00389	1.2E-15	119	181	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-16	121	175	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-17	121	175	IPR009057	Homeodomain-like
CDD	cd00086	1.22E-16	121	178	No hit	No description
PROSITE pattern	PS00027	0	152	175	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.2E-8	177	209	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	4.3E-23	177	220	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MGSDDLCNTG LVLGLGFSST GEKSKKPAAA HRPDKILEPS LTLSLSGEPY DLQVKKMDSD 60 NNKGGLSCDH QSVDLYRQDS AASSFSNVSV KREREIGSEE VEIERVSSRV SDEDEDGSNG 120 RKKLRLSKAQ SALLEESFKQ HSTLNPKQKQ DLARELNLRP RQVEVWFQNR RARTKLKQTE 180 VDCEFLKKCC ETLTEENRRL QKELQEPKAL KLTQPLYMQL PAATLTMCPS CERIGGGGGV 240 VPENAAKSPY VMAPKPHFYN PFTNPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	177	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011099420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ065729	2e-56	KJ065729.1 Sesamum indicum clone TilSSR_36930 microsatellite Sesame_36930 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099420.1	0.0	homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	3e-98	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A2G9GQ01	1e-155	A0A2G9GQ01_9LAMI; Transcription factor HEX
STRING	VIT_00s0732g00010.t01	1e-135	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA290	24	186

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-92	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]