PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

TALE

Protein Properties

Length: 765aa MW: 82913.1 Da PI: 7.2633

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011099269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.7e-09	567	604	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_011099269.1 567 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 604 664459******************************88 PP
2	BELL	121.8	3e-39	429	499	2	72
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF++v+g g+a pYt lA+ka+SrhFrcLkdaia q+ XP_011099269.1 429 RLEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDMVMGFGAAVPYTCLAQKAMSRHFRCLKDAIAAQL 499 779*****************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.7E-80	350	497	IPR006563	POX domain
Pfam	PF07526	2.8E-53	355	496	IPR006563	POX domain
PROSITE profile	PS50071	12.568	545	608	IPR001356	Homeobox domain
CDD	cd00086	4.28E-13	548	609	No hit	No description
SMART	SM00389	1.2E-9	548	612	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.99E-17	550	615	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.2E-29	551	614	IPR009057	Homeodomain-like
Pfam	PF05920	3.9E-18	565	604	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence Send to blast
MDMGIATPTL LPSVTSHSKG HNSLQYLDKQ NFSNSMSQDY HQSIFSFSNG FERSQQEQQQ 60 QHIAQQIRRD KLRVQGFQPP VPPLVGIEGE ESGELPVYET AGMLSEMFNF PSGVAATATE 120 LLENQILQSY RNPRGTPPSG GASTADWFPH RQGMVVGGAN LGDSKNQTVV NDTASHPHHQ 180 QQQHQISSIN ADSAAAMQLF LMNPQQQRSP SPSPSHPPPS TSSTLHMLLP NPSSSSTLQA 240 FQNPSAGAFG QFTWVPNSGN ENNPNEIPGV VEGQGLSLSL SSSLQHLEAA KAEELRMGEG 300 GMLFFGQGGG STPPQYQFKN FGGSGGGALH LQGGGVSHNH QLHVGLGSSL GTVNMLRNSK 360 YAKAAQELLE EFCSVGRGQF KKNKFGKQNN NNGNPSSNPS AGATSGGGAG GGNSSSSSKD 420 NPPLSAADRL EHQRRKVKLL SMLDEVDRRY NHYCEQMQMV VNSFDMVMGF GAAVPYTCLA 480 QKAMSRHFRC LKDAIAAQLK HSCELLGEKD AGTSGVTKGE TPRLRILEQS LRQQRAFHQM 540 GMMDQEAWRP QRGLPERSVN ILRAWLFEHF LHPYPSDADK HLLARQTGLS RNQVSNWFIN 600 ARVRLWKPMV EEMYQQEAKD EAASTEQDRD QSSTSAQTPT LNANPPATTT TTATSATAIT 660 PSPAKRSEIN APENDPSFVA INNNQCFSDN QPKLHHHSTA NVSLPPAPAV AQSFSVVHPS 720 NDGIHESTLI RFGTNAGDVS LTLGLRHAGN LPEKSPFSVR DFGGC

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence Send to blast

MDMGIATPTL LPSVTSHSKG HNSLQYLDKQ NFSNSMSQDY HQSIFSFSNG FERSQQEQQQ  60
QHIAQQIRRD KLRVQGFQPP VPPLVGIEGE ESGELPVYET AGMLSEMFNF PSGVAATATE  120
LLENQILQSY RNPRGTPPSG GASTADWFPH RQGMVVGGAN LGDSKNQTVV NDTASHPHHQ  180
QQQHQISSIN ADSAAAMQLF LMNPQQQRSP SPSPSHPPPS TSSTLHMLLP NPSSSSTLQA  240
FQNPSAGAFG QFTWVPNSGN ENNPNEIPGV VEGQGLSLSL SSSLQHLEAA KAEELRMGEG  300
GMLFFGQGGG STPPQYQFKN FGGSGGGALH LQGGGVSHNH QLHVGLGSSL GTVNMLRNSK  360
YAKAAQELLE EFCSVGRGQF KKNKFGKQNN NNGNPSSNPS AGATSGGGAG GGNSSSSSKD  420
NPPLSAADRL EHQRRKVKLL SMLDEVDRRY NHYCEQMQMV VNSFDMVMGF GAAVPYTCLA  480
QKAMSRHFRC LKDAIAAQLK HSCELLGEKD AGTSGVTKGE TPRLRILEQS LRQQRAFHQM  540
GMMDQEAWRP QRGLPERSVN ILRAWLFEHF LHPYPSDADK HLLARQTGLS RNQVSNWFIN  600
ARVRLWKPMV EEMYQQEAKD EAASTEQDRD QSSTSAQTPT LNANPPATTT TTATSATAIT  660
PSPAKRSEIN APENDPSFVA INNNQCFSDN QPKLHHHSTA NVSLPPAPAV AQSFSVVHPS  720
NDGIHESTLI RFGTNAGDVS LTLGLRHAGN LPEKSPFSVR DFGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	554	612	5	63	Homeobox protein Meis2
3k2a_B	2e-16	554	612	5	63	Homeobox protein Meis2
4xrm_A	2e-16	554	612	5	63	Homeobox protein Meis2
4xrm_B	2e-16	554	612	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011099269.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099269.1	0.0	BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-176	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A2G9HVH1	0.0	A0A2G9HVH1_9LAMI; Transcription factor MEIS1
STRING	Migut.H00514.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-143	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]