PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 338aa MW: 37764.1 Da PI: 7.1938

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011099212.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.3	2.3e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrrkC+++Cv+apyfp ++p+kf nvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++++l+ XP_011099212.1 7 PCAACKCLRRKCTQECVFAPYFPPDNPQKFTNVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEYRLRDPVYGCVGLISILQHKLKQVQHDLD 101 7*********************************************************************************************9 PP DUF260 96 llkee 100 +k+e XP_011099212.1 102 NAKKE 106 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.436	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-42	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MSSSNSPCAA CKCLRRKCTQ ECVFAPYFPP DNPQKFTNVH KVFGASNVAK LLNELNASQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISILQ HKLKQVQHDL DNAKKELATY IGPSAMLPIL 120 NHPGFMQQHP NYAPSAYQVM PYNVQPMMGL PTGVPHGAQL MIREPQQQQQ QQQFLEAQAA 180 AAAREQEMLR TYEQQQQQQQ NDLVRFNSGF DDAAGPVPAT GFNQIPAAAG AAMQPSLALG 240 SSYETLPYHH IQQHGNVQEH SQTQSHTHSH HPHGHQLPLQ PHELLLQQQQ QQQNVSTHHQ 300 QQQQQQTQQQ LGQPQPSHSQ QQPPRAKSEE GRSIGPSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-47	3	110	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-47	3	110	7	114	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011099212.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ054556	7e-84	KJ054556.1 Sesamum indicum clone TilSSR_25757 microsatellite Sesame_25757 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554582.1	0.0	LOB domain-containing protein 36
Swissprot	Q9FKZ3	2e-85	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2G9GG50	1e-158	A0A2G9GG50_9LAMI; Uncharacterized protein
STRING	Solyc02g065150.1.1	1e-113	(Solanum lycopersicum)
STRING	Migut.H00465.1.p	1e-112	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-79	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]