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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011099212.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | LBD | ||||||||
Protein Properties | Length: 338aa MW: 37764.1 Da PI: 7.1938 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.3 | 2.3e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrrkC+++Cv+apyfp ++p+kf nvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++++l+ XP_011099212.1 7 PCAACKCLRRKCTQECVFAPYFPPDNPQKFTNVHKVFGASNVAKLLNELNASQREDAVNSLAYEAEYRLRDPVYGCVGLISILQHKLKQVQHDLD 101 7*********************************************************************************************9 PP DUF260 96 llkee 100 +k+e XP_011099212.1 102 NAKKE 106 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.436 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-42 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MSSSNSPCAA CKCLRRKCTQ ECVFAPYFPP DNPQKFTNVH KVFGASNVAK LLNELNASQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISILQ HKLKQVQHDL DNAKKELATY IGPSAMLPIL 120 NHPGFMQQHP NYAPSAYQVM PYNVQPMMGL PTGVPHGAQL MIREPQQQQQ QQQFLEAQAA 180 AAAREQEMLR TYEQQQQQQQ NDLVRFNSGF DDAAGPVPAT GFNQIPAAAG AAMQPSLALG 240 SSYETLPYHH IQQHGNVQEH SQTQSHTHSH HPHGHQLPLQ PHELLLQQQQ QQQNVSTHHQ 300 QQQQQQTQQQ LGQPQPSHSQ QQPPRAKSEE GRSIGPSC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-47 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-47 | 3 | 110 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011099212.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ054556 | 7e-84 | KJ054556.1 Sesamum indicum clone TilSSR_25757 microsatellite Sesame_25757 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020554582.1 | 0.0 | LOB domain-containing protein 36 | ||||
Swissprot | Q9FKZ3 | 2e-85 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A2G9GG50 | 1e-158 | A0A2G9GG50_9LAMI; Uncharacterized protein | ||||
STRING | Solyc02g065150.1.1 | 1e-113 | (Solanum lycopersicum) | ||||
STRING | Migut.H00465.1.p | 1e-112 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-79 | ASYMMETRIC LEAVES 2-like 1 |
Publications ? help Back to Top | |||
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