PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011099209.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family ARF
Protein Properties Length: 471aa    MW: 52527.2 Da    PI: 8.0187
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011099209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B380.41.8e-25110211198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f kvltpsd+++ g +++p+ +a+++       + ++ +   l+++d++++ We+++iyr++++r++lt+GW++Fv+a++L +gD+vvF++++ s
  XP_011099209.1 110 FAKVLTPSDANNGGGFSVPRFCADSIfppldfaSDPPVQ--NLIMKDTHNNAWEFRHIYRGTPRRHLLTTGWSKFVNAKRLIAGDSVVFMRKK-S 201
                     89*********************999*****97555556..6************************************************765.8 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     + el+ +++r
  XP_011099209.1 202 TNELFTGIRR 211
                     8889999987 PP
2Auxin_resp82.96.9e-28239321283
      Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     +++ +++++Fevv++Pr ++++Fvv++ekve+al+  +svGmR+kma+e+edss+ ++ +Gtv+++   d+  W +S+Wr+L+
  XP_011099209.1 239 IKNSDKGTAFEVVHYPRFGSPDFVVSAEKVEDALRLCWSVGMRVKMAVESEDSSRMTWsQGTVAATVLPDSGPWCGSPWRMLQ 321
                     56678899*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.88E-30100215IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-33105212IPR015300DNA-binding pseudobarrel domain
CDDcd100176.00E-22109211No hitNo description
PfamPF023622.1E-23110211IPR003340B3 DNA binding domain
SMARTSM010191.1E-19110212IPR003340B3 DNA binding domain
PROSITE profilePS5086312.323110213IPR003340B3 DNA binding domain
PfamPF065074.8E-25241321IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MSTSSPSVSE VDAAVWRAVA GASSHIPPLN SYVYYFPQGH MEQHSSASVE NQNIELKRPF  60
IPCQVLSVRL LSNPSSDQVF VKFLLQPLHA REKRLNCSIG DSNENDLVSF AKVLTPSDAN  120
NGGGFSVPRF CADSIFPPLD FASDPPVQNL IMKDTHNNAW EFRHIYRGTP RRHLLTTGWS  180
KFVNAKRLIA GDSVVFMRKK STNELFTGIR RVGRFGCSSC WDGGENSANS SMSVVSEAIK  240
NSDKGTAFEV VHYPRFGSPD FVVSAEKVED ALRLCWSVGM RVKMAVESED SSRMTWSQGT  300
VAATVLPDSG PWCGSPWRML QVTWDEPETL LNMRRVNPWQ VEYIPPTSQL HSAFPPPKKF  360
KGLQSSGMIS DGEEEFRFPM VELARSMAGH MNSPIFNYYS PFPASMQGAR QDQFCIPSSS  420
NSQSNKPFQM FTQLLSNQIE QELRTVSTVL NIGTPQSGNS SQSTQRKQYF T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-691134251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011099209.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547741.10.0auxin response factor 17
SwissprotQ84WU61e-136ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2Z7C2580.0A0A2Z7C258_9LAMI; Auxin response factor
STRINGMigut.N03328.1.p1e-175(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-139auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]