PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011098999.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | LBD | ||||||||
Protein Properties | Length: 150aa MW: 16906.1 Da PI: 8.0304 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.4 | 6.8e-40 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C++dCv++pyfpa++p++fa+vhk++Gasnv k+lk+lp +++ +a++sl+yeA +r++dPvyG+vg+i+ l+qq+ +++ +la XP_011098999.1 5 RCAACKHLRRRCPSDCVFSPYFPANNPRRFAYVHKIYGASNVGKILKDLPVNRQAEAADSLYYEAYCRIKDPVYGCVGLITILHQQIYNAQCQLA 99 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_011098999.1 100 RIQAE 104 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.801 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.6E-39 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MNSGRCAACK HLRRRCPSDC VFSPYFPANN PRRFAYVHKI YGASNVGKIL KDLPVNRQAE 60 AADSLYYEAY CRIKDPVYGC VGLITILHQQ IYNAQCQLAR IQAEIAALGT QSQSEVQQYQ 120 QVENVGPSFL PDQNGVPNST SYYDLSTWFD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00381 | DAP | Transfer from AT3G26620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011098999.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098999.1 | 1e-110 | LOB domain-containing protein 23-like | ||||
Swissprot | P59467 | 5e-47 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
TrEMBL | A0A2G9G458 | 3e-90 | A0A2G9G458_9LAMI; Uncharacterized protein | ||||
STRING | Migut.K00626.1.p | 8e-69 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 9e-49 | LOB domain-containing protein 24 |