PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011098678.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family WRKY
Protein Properties Length: 511aa    MW: 55400.8 Da    PI: 8.0863
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011098678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.7e-32242298259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vk se+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+g+Hnhe
  XP_011098678.1 242 SDGYNWRKYGQKHVKASECPRSYYKCTHPNCPVKKKVERSF-DGRISEIIYKGQHNHE 298
                     7****************************************.***************8 PP
2WRKY106.99.8e-34397455159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver++ dpk+v++tYeg+Hnhe
  XP_011098678.1 397 LDDGYKWRKYGQKVVKGNPHPRSYYRCTYPGCNVRKHVERASADPKAVVTTYEGKHNHE 455
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-28232300IPR003657WRKY domain
PROSITE profilePS5081122.94236300IPR003657WRKY domain
SuperFamilySSF1182903.92E-25239300IPR003657WRKY domain
SMARTSM007741.1E-34241299IPR003657WRKY domain
PfamPF031067.5E-24243298IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-36383457IPR003657WRKY domain
SuperFamilySSF1182908.89E-30389457IPR003657WRKY domain
PROSITE profilePS5081137.344392457IPR003657WRKY domain
SMARTSM007742.3E-40397456IPR003657WRKY domain
PfamPF031063.1E-26398455IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGESTVGEAG GVPRPKPTIL VPPRGSMESL FTNGSGGIGF SPGPMTLVSS FFAEQGSCSF  60
SQLLAGAMAS PMAPNSGFLF GGKEEKGGNS CDDGKNSESG GGYKRNRPMN LVVAQPQLQM  120
ESLSPLFMVP QGLSPSGLLN SPGFLSPLQS PFGMSHQQAL AHVTAQAAFS QSYMQMQAEL  180
QRSSSTATAE LLANNSSSAP SETLAQPTNP VPTEPESSKI ESSEVSQSDS KAASVAGDKP  240
ASDGYNWRKY GQKHVKASEC PRSYYKCTHP NCPVKKKVER SFDGRISEII YKGQHNHEPP  300
QSNKRGKDSS QTKHVFDSQA PTEMNRLNKA VRVDPEPIAT HNDEMEDTVV VVDDGDEDEP  360
IAKRRSMDSG QSAPASSHQT ITESKIVVQT RSEVDLLDDG YKWRKYGQKV VKGNPHPRSY  420
YRCTYPGCNV RKHVERASAD PKAVVTTYEG KHNHEIPTGR YNNHGMANAS AQQLKAQKTV  480
AKNRLPSREM DVGNKDQMPM TLHLKEEQIA A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-39243457877Probable WRKY transcription factor 4
2lex_A8e-39243457877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011098678.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098678.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-133WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2G9G6J90.0A0A2G9G6J9_9LAMI; Uncharacterized protein
STRINGMigut.H00670.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-127WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]