PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011098625.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 325aa MW: 34977.9 Da PI: 8.632 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 68.2 | 1.5e-21 | 47 | 90 | 3 | 45 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaA 45 v+YkeClkNhAa+lGgha+DGCgEfmps+ ++ +++++lkCaA XP_011098625.1 47 VVTYKECLKNHAAALGGHALDGCGEFMPSPASNpAEPTSLKCAA 90 589****************************999*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.0E-16 | 48 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.8E-20 | 49 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.055 | 50 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-9 | 50 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.01E-19 | 170 | 238 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-30 | 173 | 239 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.3E-27 | 177 | 234 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MELGNSTVKT PEADTETPTR IQPAKPSPFT NGVLKRHAPL HLHHPVVVTY KECLKNHAAA 60 LGGHALDGCG EFMPSPASNP AEPTSLKCAA WPPQAPALEY QPHHRHHPPP PPPRGNSGSS 120 PNNSPSPPPI SSSYYPSAPH MLLALSHGLS GPPPDNNTPI PTTINAASAT LLNSGSRKRF 180 RTKFTQDQKE KMHEFAEKVG WKMQKRDEDV ISEFCREIGV DKGVFKVWMH NNKNTFAKKD 240 QPAPHLSNNS TTIAISTPPA ATTNGNGINY SAMSSAAAAY QHQREGNSEI KLQNIHGQEM 300 NENQLHDSSS GHHVLGANGG SSSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-21 | 176 | 235 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011098625.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098625.1 | 0.0 | zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q9LXG0 | 3e-64 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | A0A2G9I3Z9 | 1e-131 | A0A2G9I3Z9_9LAMI; Uncharacterized protein | ||||
STRING | XP_009787877.1 | 2e-84 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1088 | 24 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 5e-52 | homeobox protein 34 |
Publications ? help Back to Top | |||
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