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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011098610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 216aa MW: 24052 Da PI: 6.3129 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.2e-05 | 28 | 76 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + +rE+ Rd++N+ f L + l + + + Ka+iL+++++ +++L XP_011098610.1 28 KIHKAAREKLKRDQMNELFLDLGRTLDLD----HSNNGKASILRETIRLLREL 76 567789*******************9997....78999**********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.34E-5 | 24 | 80 | No hit | No description |
SuperFamily | SSF47459 | 5.5E-11 | 25 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.598 | 26 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-7 | 26 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGSETAHPVH DGVEIRTSKK STGKVPRKIH KAAREKLKRD QMNELFLDLG RTLDLDHSNN 60 GKASILRETI RLLRELLTEV DNLRKENATL FSESNYVTIE KNELLEETSA LDDQIKGLQR 120 EIDKKANCSD LNVSEPQNSA SAQLLEDPVA FPLVGHASES TSVVTPVFVM PLHHESQGFP 180 SPFSEVNMST VPSSVSRPQP RYPSSSDSWP SHILTK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 40 | AREKLKRDQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011098610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098609.1 | 1e-158 | transcription factor bHLH47 isoform X1 | ||||
Refseq | XP_011098610.1 | 1e-158 | transcription factor bHLH47 isoform X2 | ||||
TrEMBL | A0A2G9I402 | 1e-104 | A0A2G9I402_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00911.1.p | 4e-93 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 3e-39 | bHLH family protein |