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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011098609.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28157.7 Da PI: 7.0345 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.7 | 5.5e-05 | 64 | 112 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + +rE+ Rd++N+ f L + l + + + Ka+iL+++++ +++L XP_011098609.1 64 KIHKAAREKLKRDQMNELFLDLGRTLDLD----HSNNGKASILRETIRLLREL 112 567789*******************9997....78999**********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.45E-5 | 60 | 116 | No hit | No description |
SuperFamily | SSF47459 | 7.46E-11 | 61 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.598 | 62 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-7 | 62 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MHSYRTPVSS VYLLIAAEKS FVVKGNSFPQ SVNFYRMGSE TAHPVHDGVE IRTSKKSTGK 60 VPRKIHKAAR EKLKRDQMNE LFLDLGRTLD LDHSNNGKAS ILRETIRLLR ELLTEVDNLR 120 KENATLFSES NYVTIEKNEL LEETSALDDQ IKGLQREIDK KANCSDLNVS EPQNSASAQL 180 LEDPVAFPLV GHASESTSVV TPVFVMPLHH ESQGFPSPFS EVNMSTVPSS VSRPQPRYPS 240 SSDSWPSHIL TK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 76 | AREKLKRDQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011098609.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098609.1 | 0.0 | transcription factor bHLH47 isoform X1 | ||||
TrEMBL | A0A2G9I402 | 1e-104 | A0A2G9I402_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H00911.1.p | 9e-93 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4307 | 19 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 8e-39 | bHLH family protein |