![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_011098606.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 94aa MW: 10517.8 Da PI: 10.0252 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.3 | 8.8e-06 | 22 | 62 | 15 | 54 |
HHHHHHHHHHCTSCC.C...TTS-STCHH...HHHHHHHHHHHH CS HLH 15 riNsafeeLrellPk.askapskKlsKae...iLekAveYIksL 54 +i + ++L +llP+ + + ++++Ka+ +L+++++YI++L XP_011098606.1 22 QIIDLVSKLHQLLPEiR---TTRRPNKASankVLQETCNYIRDL 62 56667799*******99...7777888755559*********99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.813 | 7 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-7 | 20 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-7 | 23 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 94 aa Download sequence Send to blast |
MSSSGRRSRQ SSSGSSRISD DQIIDLVSKL HQLLPEIRTT RRPNKASANK VLQETCNYIR 60 DLHKEVDNLS ERLSQLLSTI DANSPEAAII RSLI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_011098606.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098606.1 | 1e-60 | transcription factor PRE1 | ||||
Swissprot | Q9LJX1 | 3e-40 | PRE5_ARATH; Transcription factor PRE5 | ||||
TrEMBL | A0A2G9I4F9 | 1e-46 | A0A2G9I4F9_9LAMI; Uncharacterized protein | ||||
STRING | XP_009758713.1 | 5e-46 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA353 | 24 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39860.1 | 1e-32 | bHLH family protein |