PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011098401.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

HB-other

Protein Properties

Length: 209aa MW: 23898.5 Da PI: 8.6487

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011098401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.6	5.9e-20	44	99	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+eq++++e++F+++++p+ ++r+eL++klgL+ qVk+WFqN+R++ k XP_011098401.1 44 RKRYHRHTPEQIQQMEAFFKQHPNPNNNQRKELSDKLGLEPLQVKFWFQNKRTQLK 99 78999***********************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-20	25	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-18	32	101	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.001	41	101	IPR001356	Homeobox domain
SMART	SM00389	7.3E-17	43	105	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-17	44	99	IPR001356	Homeobox domain
CDD	cd00086	1.17E-15	44	99	No hit	No description
PRINTS	PR00031	8.9E-5	72	81	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	76	99	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.9E-5	81	97	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MLPDLNSNAS GGDESQRKRD DGINNKTSSE NLDNNSINNQ ELKRKRYHRH TPEQIQQMEA 60 FFKQHPNPNN NQRKELSDKL GLEPLQVKFW FQNKRTQLKT WHEHHKNSHF RSENNELRAE 120 NMRCREALSN ARCRACGSAI AAAEMSSNEH CLRVENAQLR EQIEYLAAFL AKFVGKPLGD 180 DAVTPSSTAS ATIDTDAVQK LKGKQKIDD

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011098401.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010657309.1	6e-62	PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
Swissprot	Q0J9X2	5e-61	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	A0A2G9HLE3	5e-67	A0A2G9HLE3_9LAMI; Uncharacterized protein
STRING	POPTR_0014s15010.1	2e-61	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13806	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.3	8e-59	homeodomain GLABROUS 2

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]