PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011098359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 28716.7 Da PI: 7.7496 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.9 | 6.7e-12 | 156 | 241 | 1 | 98 |
EEEE-..-HH.HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdv.lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+l+ sd+ lk++rl++pk++a e ++d++g++We+ ++y+ ++g+ yvl+ G +++ +++ + gD+v+F++++ +++ XP_011098359.1 156 FEKILSASDAdLKLARLIIPKRCA-E------------IQDTEGNEWEFHYRYWLNGGSriYVLE-GLRDYMVSKKWQPGDTVTFYRVD-PGGKV 235 8899998887245699******99.2............4599***********544444448888.********************776.77767 PP EEEEE- CS B3 93 vvkvfr 98 v+++++ XP_011098359.1 236 VMGLRK 241 777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-4 | 151 | 180 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.41E-15 | 153 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.01E-16 | 154 | 241 | No hit | No description |
Pfam | PF02362 | 2.4E-8 | 156 | 241 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.6E-9 | 156 | 243 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-10 | 181 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MASSSRLSCF HCQDSSSSPG HFRNGWRLRS GEYAQLCPRC ACVYEEGRFC ETFHSNDDGW 60 RDCESCGKLV HCGCIVSFNT HLLLDFGGII CMECSRFNFL LARNRCLSLE PEIRAKEPYQ 120 ERTGQALLEA QCWHRVTDLD LQQVSRSPKA TVTPLFEKIL SASDADLKLA RLIIPKRCAE 180 IQDTEGNEWE FHYRYWLNGG SRIYVLEGLR DYMVSKKWQP GDTVTFYRVD PGGKVVMGLR 240 KTSTGHQLPR I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-32 | 135 | 248 | 3 | 130 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011098359.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098359.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X2 | ||||
Swissprot | Q6Z3U3 | 5e-36 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A2G9IAF1 | 1e-162 | A0A2G9IAF1_9LAMI; Uncharacterized protein | ||||
STRING | Migut.H01903.1.p | 1e-135 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 3e-34 | high-level expression of sugar-inducible gene 2 |
Publications ? help Back to Top | |||
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