PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011098358.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

Protein Properties

Length: 266aa MW: 30383.7 Da PI: 7.9155

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011098358.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.6	3.4e-16	156	256	1	98
EEEE-..-HH.HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdv.lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+l+ sd+ lk++rl++pk++ae++ +++ + ++++d++g++We+ ++y+ ++g+ yvl+ G +++ +++ + gD+v+F++++ ++ XP_011098358.1 156 FEKILSASDAdLKLARLIIPKRCAEAFfpDISALHGLRIKIQDTEGNEWEFHYRYWLNGGSriYVLE-GLRDYMVSKKWQPGDTVTFYRVD-PGG 248 89999999972466************9777778889*************544444448888.******************776.777 PP ..EEEEE- CS B3 91 elvvkvfr 98 + v+++++ XP_011098358.1 249 KVVMGLRK 256 67777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.5E-23	151	260	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.72E-19	153	259	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.87E-20	154	256	No hit	No description
SMART	SM01019	1.3E-15	156	258	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.1E-13	156	256	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.615	157	258	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MASSSRLSCF HCQDSSSSPG HFRNGWRLRS GEYAQLCPRC ACVYEEGRFC ETFHSNDDGW 60 RDCESCGKLV HCGCIVSFNT HLLLDFGGII CMECSRFNFL LARNRCLSLE PEIRAKEPYQ 120 ERTGQALLEA QCWHRVTDLD LQQVSRSPKA TVTPLFEKIL SASDADLKLA RLIIPKRCAE 180 AFFPDISALH GLRIKIQDTE GNEWEFHYRY WLNGGSRIYV LEGLRDYMVS KKWQPGDTVT 240 FYRVDPGGKV VMGLRKTSTG HQLPRI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-41	135	263	3	130	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011098358.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098358.1	0.0	B3 domain-containing protein Os07g0563300-like isoform X1
Swissprot	Q6Z3U3	4e-43	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2G9IAF1	1e-176	A0A2G9IAF1_9LAMI; Uncharacterized protein
STRING	Migut.H01903.1.p	1e-149	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12994	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	1e-42	high-level expression of sugar-inducible gene 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]