PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011098344.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 38033.7 Da PI: 8.5502 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.2 | 1.6e-53 | 15 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ XP_011098344.1 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-SIIAEVDLYKYDPWELPAKAIFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTA 108 79****************************.89***************7777899**************************************99 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg kt+W+mheyrl XP_011098344.1 109 gGTQKVGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 77788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.19E-64 | 7 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.799 | 15 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-28 | 16 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MESTDSSTCS QQPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVSIIAEV DLYKYDPWEL 60 PAKAIFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVLTAGG TQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLADNKPASN KPPGCDFSNK KASLRLDDWV LCRIYKKNNA 180 QRPVDQERDE LNDVIGSIPP TISIGQHKFL DNNDHQNYYE GMMMNDSMNS HLGTNKASTG 240 HHHHHQQLPL VAHNLLPTKR ALPNLYWNDV EGNDNSASTK RFLSENCVGR TDETTSIATI 300 LSQLPQTPSL QQQTMLGNLE NGVFGQQTYQ VSGMNWYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-74 | 1 | 180 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-74 | 1 | 180 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-74 | 1 | 180 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-74 | 1 | 180 | 6 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-74 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-74 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-74 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-74 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-74 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-74 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-74 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-74 | 1 | 180 | 9 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-74 | 1 | 180 | 6 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-74 | 1 | 180 | 6 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011098344.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098344.1 | 0.0 | NAC transcription factor 56 | ||||
Swissprot | Q9LD44 | 1e-122 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A2G9HYQ0 | 0.0 | A0A2G9HYQ0_9LAMI; Uncharacterized protein | ||||
STRING | Migut.M00864.1.p | 1e-170 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1814 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-119 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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