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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011097997.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | ARF | ||||||||
Protein Properties | Length: 832aa MW: 92653 Da PI: 6.3655 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73 | 3.6e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ + + ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_011097997.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217 99*****************************7444..44459************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_011097997.1 218 KNQLLLGIRRA 228 9999****997 PP | |||||||
2 | Auxin_resp | 119.7 | 2.3e-39 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v+YnPras+seFv++++k++ka+ ++vsvGmRf+m fete+ss rr++Gtv+g+sdldpvrWpnS+Wrs+k XP_011097997.1 253 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTVTGISDLDPVRWPNSHWRSVK 336 79********************************87599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.12E-48 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-41 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.53E-21 | 126 | 227 | No hit | No description |
PROSITE profile | PS50863 | 12.308 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.9E-34 | 253 | 336 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.75E-7 | 702 | 782 | No hit | No description |
Pfam | PF02309 | 1.6E-7 | 704 | 793 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 24.028 | 708 | 792 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 832 aa Download sequence Send to blast |
MKLSTSGLSQ QSHEGEKKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE 60 VDAQIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDA YLPVELGTPS 120 RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPAQELIAR DLHDVEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL 240 SSDSMHIGLL AAAAHAAATN SCFTVFYNPR ASPSEFVIPL SKYVKAVFHT RVSVGMRFRM 300 LFETEESSVR RYMGTVTGIS DLDPVRWPNS HWRSVKVGWD ESTAGEKQPR VSLWEIEPLT 360 TFPMYPSLFP LRLKRPWYPG ASSFQDVSNE AINGLAWLRS GEQGFNSVNF QSVGMFPWIQ 420 QQRLDPMGSS NDFGQQYQAM LAGGLQNFGS GELPKHQLMH FQQPVHYLQH SGNHNPVSQQ 480 QQVVQPSVSL HMLPAQTQML SDNMQRPAEQ QVDHQSQEHL QQHNYQEAFL IQHDKLQQRQ 540 SLDILSPSFT KSDFTNSNSN FSAPTAQSCI QNMLGSICHE GNGNLLGFSR SGPQILTEQP 600 TQQSWVPKFA QSPVSGCSNS KPIPSYSGKD GSIEQETCNL DVQNQALFGA NIDSSGLLMH 660 IGTSSVHADM SSMPLGASGH QSPLYGYVQD SSDVLHSTGQ VDQSTPDHTF VKVYKTGSVG 720 RSLDIGRFNS YQELRQELGQ MFGIKGLLED PQRSGWQLVF VDRENDVLLL GDDPWEAFVN 780 NVWYIKILSP EDVLRLGKDE AESLSRSAVE RIPNDDTQNP VCGLPSLGSL EY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 16 | 357 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011097997.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011097997.1 | 0.0 | auxin response factor 8-like | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A2G9H4W8 | 0.0 | A0A2G9H4W8_9LAMI; Auxin response factor | ||||
STRING | XP_009612885.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3857 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |