PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011097951.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 438aa MW: 47881.6 Da PI: 7.8655

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011097951.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	6.2e-06	329	367	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_011097951.1 329 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 367 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.1	318	367	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.78E-7	328	372	No hit	No description
SuperFamily	SSF47459	9.29E-12	328	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0037	329	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-9	332	375	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MADDQFQLGG GNWWDTSRNR FDSSGTTPTS ISTTLNAIAS FGWPTEMVDT KSRSSMDSAT 60 PSSAVGHGGV LANQNLQMMG LGLSSQSMDW NPALFRGEKG ESSFRALLQE DMSSXXXXRX 120 ASQEHWRHKL YSGASSEDSS VNINPRGFSL DQPQFSSQAS SNDSTITSQT GFQVDSSAAY 180 GLLLSENQHH SAYPNRPMNY PYPPSTYGGV NTAELVPSWN KYPQFLRTSP PKQAPPQAAG 240 SSSHLHFTNN TPFWNASAPA AVMSDARSSF FPGLQTQIPT TSSLDEKPKI KSTSEGRDSG 300 TTTKKNSMEA SNKRPRGNEN PPPLPAFKVR KEKMGDRITA LQQLVSPFGK TDTASVLSEA 360 IEYIKFLHEQ VSVLSTPYMK NGAPIQHQQS SDKSKDSEGP RQDLRSRGLC LVPISSTFPM 420 THETTVDFWT PTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MADDQFQLGG GNWWDTSRNR FDSSGTTPTS ISTTLNAIAS FGWPTEMVDT KSRSSMDSAT  60
PSSAVGHGGV LANQNLQMMG LGLSSQSMDW NPALFRGEKG ESSFRALLQE DMSSXXXXRX  120
ASQEHWRHKL YSGASSEDSS VNINPRGFSL DQPQFSSQAS SNDSTITSQT GFQVDSSAAY  180
GLLLSENQHH SAYPNRPMNY PYPPSTYGGV NTAELVPSWN KYPQFLRTSP PKQAPPQAAG  240
SSSHLHFTNN TPFWNASAPA AVMSDARSSF FPGLQTQIPT TSSLDEKPKI KSTSEGRDSG  300
TTTKKNSMEA SNKRPRGNEN PPPLPAFKVR KEKMGDRITA LQQLVSPFGK TDTASVLSEA  360
IEYIKFLHEQ VSVLSTPYMK NGAPIQHQQS SDKSKDSEGP RQDLRSRGLC LVPISSTFPM  420
THETTVDFWT PTFGGTFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011097951.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020554489.1	0.0	transcription factor bHLH123-like, partial
TrEMBL	A0A2Z7DA36	0.0	A0A2Z7DA36_9LAMI; Basic helix-loop-helix DNA-binding superfamily protein
STRING	Migut.M01838.1.p	1e-170	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-72	bHLH family protein