PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011097935.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 439aa    MW: 47869.5 Da    PI: 9.5018
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011097935.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-05210231323
                     ETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                     C++Cg+ F  ++ L++H ++ H
  XP_011097935.1 210 CHKCGEQFVKWEALESHHQSkH 231
                     *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280210231IPR007087Zinc finger, C2H2
SuperFamilySSF563992.11E-20233438No hitNo description
Gene3DG3DSA:3.90.228.107.6E-8243433IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGEKSKKKKK DVMPTVWISL KKSLHCKSEL SEVHDPSRGK QLSPILTRKT GRSGCSRSIA  60
NLKDVVIHGS KRHAEKPPSC SPRSIGSSEL LNPITHEVIL SNSKCELKIT SFGGLHEGFN  120
GGGDDGGXGG GDDGGAAGSG CGSTFVGTLR PGTPGPGGHP TMHYFSSSLR NSATPTRKSD  180
HFLTEREGFR NGQKRTSTQK NSNGTNPAAC HKCGEQFVKW EALESHHQSK HAVTELLEGD  240
SSRKIVEIIC RSNWLTSENH CVRIDRVLKV HNMQKTLARF EDYREAVKIK ASELAKKHPR  300
CLADGNELLR FHGTNLACSL GMNGSSSLCV SDKCCVCRII RYGFSMLKGK VGVFTTSTSG  360
RAFELIEINE ADQFMRKALI VCRVIAGRVH RPLENIQDMA GQTGFDSLAG KVGLYSNIEE  420
LYLLNPKALL PCFVVICKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011097935.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0294752e-35KJ029475.1 Sesamum indicum clone TilSSR_676 microsatellite sesame_676 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097935.10.0uncharacterized protein LOC105176736
TrEMBLA0A2C9W6P30.0A0A2C9W6P3_MANES; Uncharacterized protein
STRINGXP_010267823.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-164C2H2 family protein